Arabidopsis thaliana (thale cress): AT1G07705
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Entry
AT1G07705 CDS
T00041
Name
(RefSeq) NOT2 / NOT3 / NOT5 family
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G07705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G07705
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT1G07705
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AT1G07705
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
zf-C2H2_CASZ1_1
Motif
Other DBs
NCBI-GeneID:
837284
NCBI-ProteinID:
NP_001077478
TAIR:
AT1G07705
UniProt:
A8MR45
LinkDB
All DBs
Position
1:2381555..2386157
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AA seq
614 aa
AA seq
DB search
MSSLLNSSINGSTSNLSDGSGRTFTSSFSGQSGAASPVFHHAGSIQGLHNIHGNFNVPNL
AGSLGSRNSSLNGVPSAGVQQQNGSISNGRFASSNIPVALSQMSHGSSHGHSGLTNRGGL
GVSPILGNVGSRMTSSMGNMVGGGTMGRTLSSGGGLSIPSLGSRLNLAVNSGSGNIGQNR
MMGGVLPQGSPQVLSMLGNSYPSAGGLSQNHVQAMNSLSSMGLLNDMNSNDTSPFDINND
FPQLTSRPSSAGSQGQLGSRLKQGLGISPIVQQNQEFSIQNEDFPALPGYKGSSADYPMD
LHHKEQLHENSVLMMQSQQLSMGRSGGFNLGGAYTSHRPQQQQQHAQAVSSSGVSLHGSD
IFSSSHPPYHSQTGGAPGIGLRSMNSANSITGMGYDQQLIQQYQHQQNSAQYRLQQMSAA
SQPFRDVGLKSMQSTQSNPDRFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENL
HKTFGSPWSNEPSKVDPEFSVPQCYYAKNPPPLHQGLFAKLLVETLFYVFYSMPKDEAQL
YAANELYNRGWFYHKEHRLWFIRIGEPLVKTNAYERGSYHCFDPNSFEIVQKENFVLYYE
MLEKRPSISQDSQH
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtttacttaattcctcaataaacgggtctacctcgaatttgtcagacggttca
gggaggacgtttacttcttctttctccggtcagtctggggcagcgtctccagtttttcat
catgctggatctattcagggccttcataatattcatggaaactttaatgttcccaacttg
gcgggaagtcttggatcgagaaattcaagtctaaatggtgttccatctgctggtgtccaa
caacaaaatggaagtatttcgaatggaagatttgcatccagcaatattccggttgcactc
tctcagatgtctcatggtagctcccatggacactcaggactcactaataggggaggattg
ggagtttctccaatattgggaaatgtaggttctcgaatgacgagttctatggggaatatg
gttggtggaggcacaatgggtaggactttgagctctggtggaggattgtcgattccgagt
cttggttcgcggctaaatttggcagtaaatagcggatccggaaatattggacaaaatcgc
atgatgggtggggtcttgccacaaggatctccgcaggttctttcgatgctgggaaattct
tacccttcagctggaggactttcccaaaatcatgttcaagcaatgaacagtctaagctct
atgggtttgctgaatgatatgaactccaacgacacttctccgtttgatattaataatgat
tttcctcagctcacaagccgccccagctctgcgggcagtcaaggacaattggggtctcga
ttgaaacaaggccttggaatcagccctatagttcagcaaaaccaagagttcagcatccaa
aatgaagattttccagcattgccaggatacaaaggtagtagtgctgattatccaatggat
ttgcatcataaagaacaactccatgagaactcagttttaatgatgcaatctcaacaatta
tctatgggaaggtctggtgggtttaacttaggtggagcatatacatcacaccgtcctcaa
caacagcaacaacatgctcaagctgtgagtagtagtggtgtttccttacatgggtctgac
atcttctcatcttcgcatccgccttaccactcacagactggtggagctccgggtattgga
ttaagatctatgaattctgcaaattctatcactgggatgggttatgaccagcagctcatc
cagcaatatcagcaccaacagaactcagcccagtatcgcttgcagcagatgtcagctgct
agccaacctttcagagatgtaggattaaaatcaatgcaatcgacacagtcaaatcctgat
cggtttggcttactcggtttgctcagtgtgataaagatgagcgaccctgacttgacttct
ttggcacttggtattgatctgacaacactggggttaaatttgaactcaacagaaaatctt
cataagacttttggctcgccttggtccaatgaaccctctaaagttgatccagaattcagt
gtaccgcagtgttactacgcaaaaaaccctccacctctacatcaagggctctttgcaaaa
ttattggtagaaacattgttttacgtattctatagcatgccgaaagatgaggcgcaactc
tatgcggctaatgaactttacaataggggttggttctaccacaaagaacacaggttgtgg
ttcattagaatcggggaacctctcgtgaaaacaaatgcgtatgaaagaggatcatatcac
tgttttgatccaaactcatttgagatcgttcaaaaggaaaattttgttctctattacgag
atgctggaaaaaagaccatccatttctcaagattctcaacattga
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