KEGG   Arabidopsis thaliana (thale cress): AT1G08190
Entry
AT1G08190         CDS       T00041                                 
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting 41
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:ath00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    AT1G08190 (VPS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ath04131]
    AT1G08190 (VPS41)
Membrane trafficking [BR:ath04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    AT1G08190 (VPS41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 WD40_WDHD1_1st Clathrin Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_WDR5 WD40 WD40_Prp19 WDR55 zf_RING_Vps8 Beta-prop_EML_2 zf_RING_Vps8_fungal Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_HPS5 WDR90_beta-prop_4th zf-RING_2 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd EIF3I PEP5_VPS11_N WD40_Gbeta ANAPC4_WD40 Beta-prop_IP5PC_F VPS11_N Beta-prop_WDR11_2nd Beta-prop_CAF1B_HIR1 Mcl1_mid zf-RING_16
Other DBs
NCBI-GeneID: 837340
NCBI-ProteinID: NP_172297
TAIR: AT1G08190
UniProt: P93043
LinkDB
Position
1:2567420..2573448
AA seq 980 aa
MAAVPPENGVDGDDEREEEEEDEEEEEEEEEEENGDEAEEEPRLKYQRMGGNVPALLSND
AASCIAVAARMIALGTHDGTVRILDLLGNQVKEFRAHTAPVNDINFDTEGEYIGSCSDDG
SVVINSLFTDDEKMKFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNSKKWFGNKD
QVLHSGEGPIHSVKWRGSLIAWANDVGVKVYDTAKDQRVTFIEKPRGSPRPEALLPHLVW
QDDTLLVIGWGTSVKIASIKSDQQQTGTFRQIQMSSLTQVDIVASFQTSYYISGIAPFGD
SLVILAYIPIEGDGEKEFSSTTTLSRQGNAQRPEIRIVSWNNDELTMDALPVHGFEHYKA
KDYSLAHAPFPGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHINWLLQHGFHEKA
LAAVEASEGRTELIDKVGAGYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAQLR
QLPVLVPYMPTDNPRLKDTVYEVALVALATNPSYHKELLSAVKSWPRSVYSALTVISAIE
PQLNTSSMTDALKEALAELYVIDGQYQKAFSLYADLLKPEVFDFIEKYSLHEAIRGKVVQ
LMLLDCKRATVLFIQNRDLIPPSEVVPQLLKAGKNPQVLKAGKKCDSRYYLYLYLHALFE
VSHDTGKDFHDMQVELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDFLREQVFVLGRM
GNAKQALAVIINKLGDIEEAVEFVSMQHDDDLWEELIKQCLNKPEMVGLLLEHTVGNLDP
LYIVNMVPNGLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKTDIVNLLVKCFNEARRGV
CLSHEDDDSRAKREDNNRSSFSQRMVVDKSLSIKMTEVKSKTRGDTRCCMCFDPVSIRGD
TVVVFFCCHAYHETCLMDAAFSNNNHKTTKGSSGYEYSYDNGVDEEEEDEEEDEDGDGDR
PGRSRLRCILCTTAAAASAR
NT seq 2943 nt   +upstreamnt  +downstreamnt
atggctgcggttccgcctgaaaacggcgtggacggagatgacgaaagagaggaagaagaa
gaggacgaggaggaggaagaagaagaagaagaagaagagaacggagatgaggctgaggag
gagccacgtctcaaatatcagaggatgggtggcaacgttcctgcgttgctatctaacgat
gctgcttcctgcatcgctgttgctgcgaggatgatcgcgcttggtacgcacgacggtacc
gtgcgtatcctcgatttattggggaatcaggttaaagaatttcgtgcccacactgctccg
gttaatgacatcaactttgacactgagggagagtatatcggaagctgttcagacgatggg
tctgttgttataaacagccttttcactgatgatgagaagatgaaatttgattatcatcgc
cccatgaaggccatttccttggatccagattatacgaaaaagcaatctaagagatttgta
gctggtggcttggctggtcacttgtatatgaactccaagaagtggttcggtaataaagat
caggtgctgcattctggggaaggtccaattcattctgtgaagtggagaggaagtctcatc
gcctgggctaatgatgttggtgttaaagtttatgatacagccaaagatcagcgtgttaca
tttattgaaaaaccgcgaggaagccccaggcctgaggctttactaccccacttggtttgg
caggatgacactctccttgtgattggttggggaacatcagttaaaattgcgtcgattaaa
tcagaccagcaacaaactggaacttttaggcagattcagatgtctagtctaacccaagta
gatattgtggcatctttccaaaccagctattacatttcagggattgctccctttggtgat
tctctggttattcttgcttatatacccattgaaggagatggtgagaaggaatttagcagc
accactactctatcgcgtcagggaaatgcccagaggcctgaaatacgcattgtatcatgg
aacaatgatgaactcacaatggatgctcttcctgtacacggctttgagcattacaaggcg
aaagactattcccttgctcatgctcctttcccaggtagtagctacgctgggggacagtgg
gcagctggtgatgaaccactgtactatattgtttcgccaaaggatgttgtgattgccaaa
cccagggatgctgaagatcacataaactggcttttgcaacatggattccacgagaaagcc
ctagcagctgttgaggctagtgaaggacgaaccgaactaattgataaggtgggagctggg
tatcttgatcatttgattgtggaaagaaaatatgctgaagcggcatctttatgccccaaa
ttgttacgaggatctgcttcagcctgggagaggtgggttttccattttgctcaactacgc
cagctgcctgttcttgtcccatatatgcctacggataacccaaggcttaaggatactgtg
tatgaggttgctctagttgcactagcaaccaatccctcataccacaaggagcttttgtca
gcggttaaatcttggccacgttctgtatattctgctttgactgttatctcagcaatagag
cctcaactgaacacatcttcaatgacagatgccctcaaagaggcgctggcagagctgtat
gtaattgatggacagtatcagaaggccttctccctatatgctgatcttctcaaaccagaa
gtgtttgacttcattgagaaatacagcttgcatgaggcgattcgcggaaaggtggtccag
ttaatgttgcttgattgcaagcgtgccactgtcttatttatccaaaatagggatttgatt
cctccatctgaagttgttccacaacttctgaaggctggcaaaaatccacaagttctgaaa
gctggcaaaaaatgtgattcaagatattacttgtacttatatctgcatgcattatttgaa
gttagtcatgataccgggaaggattttcatgatatgcaggtagaactctatgcagaatac
gatactaagatgctgcttccgttcctacgtagcagtcaacattacaagttagaaaaggca
tatgaactttgtgtcaagaaagattttttaagagagcaagtgtttgtcctgggaaggatg
ggaaatgcaaaacaagctcttgcagtcatcataaataaactgggagatatagaagaggct
gtggaatttgtgtccatgcagcacgatgatgatctatgggaagagctgattaaacaatgt
ctaaacaagcctgagatggtgggcttgctgttggagcacacagttggcaacctcgaccct
ctttacattgtaaatatggtcccaaatggcttggaaatacctcgattaagggatcgattg
gtcaaaatcgtaacagattacagaactgagacatctcttagacacggttgcaatgacatt
ctcaagacggatattgttaatcttctggtcaaatgcttcaacgaggctaggcgtggggtc
tgcctgagccatgaagacgacgattcccgtgcgaagagagaagacaataatcgctcatca
ttctcgcagagaatggtagtagataaatctttgagcataaagatgacagaagtgaagtcg
aagacacggggggacacacggtgttgtatgtgcttcgacccggtctcgataagaggggac
actgtagtggtcttcttctgctgccatgcttaccacgagacgtgcctcatggatgcagcc
ttcagtaacaacaatcacaagacaaccaaaggttcttcggggtatgaatatagctacgat
aacggtgtggatgaggaggaagaggatgaggaagaagatgaggatggtgatggagacaga
cctgggcggtcgcgtttacggtgcatattatgtactactgccgccgctgcgtccgctcgg
tag

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