Arabidopsis thaliana (thale cress): AT1G09570
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Entry
AT1G09570 CDS
T00041
Symbol
PHYA
Name
(RefSeq) phytochrome A
KO
K12120
phytochrome A
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
AT1G09570 (PHYA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_9
PAS_4
HisKA
PAS_8
PAS_3
Yop-YscD_ppl_3rd
Motif
Other DBs
NCBI-GeneID:
837483
NCBI-ProteinID:
NP_001322909
TAIR:
AT1G09570
UniProt:
P14712
A0A178W883
Structure
PDB
PDBj
LinkDB
All DBs
Position
1:complement(3095160..3100819)
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AA seq
1122 aa
AA seq
DB search
MSGSRPTQSSEGSRRSRHSARIIAQTTVDAKLHADFEESGSSFDYSTSVRVTGPVVENQP
PRSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENASELLTMASHAVPSVGEH
PVLGIGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCRTSAKPFYAIIHRVTGSIII
DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM
AYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHARV
LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDATTQPQ
KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELDNQMVEKNILRTQTLL
CDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEYHM
DSTGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD
DRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSETTDVNTKVI
YSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVDEA
IGKHFLTLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD
LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTEWNP
AMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQDPEKVSFA
FFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTAVKRLKAL
AYIKRQIRNPLSGIMFTRKMIEGTELGPEQRRILQTSALCQKQLSKILDDSDLESIIEGC
LDLEMKEFTLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLADFM
LMAVNFTPSGGQLTVSASLRKDQLGRSVHLANLEIRLTHTGAGIPEFLLNQMFGTEEDVS
EEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAELAAANK
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggctctaggccgactcagtcctctgagggctcaaggcgatcaaggcacagcgct
aggatcattgcgcagaccactgtagatgcgaaactccatgctgattttgaggagtcaggc
agctcctttgattactcaacctcagtgcgtgtcactggcccggttgtggagaatcagcca
ccaaggtctgacaaagttaccacgacttatcttcatcatatacagaagggaaagctgatt
cagcccttcggttgtttacttgccttggatgagaagaccttcaaagttattgcatacagc
gagaatgcatctgagctgttgacaatggccagtcatgcagttcctagtgttggcgaacac
cctgttctaggcattgggacagatataaggagtcttttcactgctcctagtgcgtctgca
ttgcagaaagcccttggatttggagatgtctctcttttgaatcccattcttgtgcactgc
aggacttctgcaaagcccttttatgcgattatccacagggttacagggagcatcatcatc
gactttgaacccgtgaagccttatgaagtccccatgacagctgctggtgccttacaatca
tacaagctcgctgccaaagcaatcactaggctgcaatctttacccagcgggagtatggaa
aggctttgtgatacaatggttcaagaggtttttgaactcacggggtatgacagggtgatg
gcttataagtttcatgaagatgatcacggtgaggttgtctccgaggttacaaaacctggg
ctggagccttatcttgggctgcattatcctgccaccgacatccctcaagcagcccgtttt
ctgtttatgaagaacaaggtccggatgatagttgattgcaatgcaaaacatgctagggtg
cttcaagatgaaaagctttcctttgaccttaccttgtgtggctccacccttagagcaccg
cacagctgccatttgcagtacatggccaacatggattcaattgcatctctggttatggcg
gttgtagttaacgaggaagatggagaaggggatgctcctgatgctactacacagcctcaa
aagagaaagagactatggggtttagtggtttgtcacaatacgactccgaggtttgttcca
tttcctctcaggtatgcctgtgagtttctagctcaagtgtttgccatacacgtcaataag
gaggtggaactcgataaccagatggtggagaagaacattttgcgcacgcagacactcttg
tgcgatatgctgatgcgtgatgctccactgggtattgtgtcgcaaagccccaacataatg
gaccttgtgaaatgtgatggagcagctctcttgtataaagacaagatatggaaactggga
acaactccaagtgagttccacctgcaggagatagcttcatggttgtgtgaataccacatg
gattcaacgggtttgagcactgatagtttgcatgacgccgggtttcctagggctctatct
ctcggggattcggtatgtgggatggcagctgtgaggatatcatcgaaagacatgattttc
tggttccgttctcataccgctggtgaagtgagatggggaggtgcgaagcatgatccagat
gatagggatgatgcaaggagaatgcacccaaggtcatcgttcaaggctttccttgaagtg
gtcaagacaaggagtttaccttggaaggactatgagatggatgccatacactccttgcaa
cttattttgaggaatgctttcaaggatagtgaaactactgatgtgaatacaaaggtcatt
tactcgaagctaaatgatctcaaaattgatggtatacaagaactagaagctgtgaccagt
gagatggttcgtttaattgagactgctacggtgccaatattggcggttgattctgatgga
ctggttaatggttggaacacgaaaattgctgagctgactggtctttcggttgatgaagca
atcgggaagcatttcctcacacttgttgaagattcttcagtggaaatcgttaaaaggatg
ctagagaacgcattagaaggaactgaggagcagaatgtccagtttgagatcaagacacat
ctgtccagggctgatgctgggccaataagtttagttgtaaatgcatgcgcaagtagagat
ctccatgaaaacgtggttggggtgtgttttgtagcccatgatcttactggccagaagact
gtgatggacaagtttacgcggattgaaggtgattacaaggcaatcatccaaaatccaaac
ccgctgatcccgccaatatttggtaccgatgagtttggatggtgcacagagtggaatcca
gcaatgtcaaagttaaccggtttgaagcgagaggaagtgattgacaaaatgctcttagga
gaagtatttgggacgcagaagtcatgttgtcgtctaaagaatcaagaagcctttgtaaac
cttgggattgtgctgaacaatgctgtgaccagtcaagatccagagaaagtatcgtttgct
ttctttacaagaggtggcaagtatgtggagtgtctgttgtgtgtgagtaagaaactggac
agggaaggtgtagtgacaggtgtcttctgtttcctgcaacttgccagccatgagctgcag
caagcgctccatgttcaacgtttagctgagcgaaccgcagtgaagagactaaaggctcta
gcatacataaaaagacagatcaggaatccgctatctgggatcatgtttacaaggaaaatg
atagagggtactgaattaggaccagagcaaagacggattttgcaaactagcgcgttatgt
cagaagcaactaagcaagatcctcgatgattcggatcttgaaagcatcattgaaggatgc
ttggatttggaaatgaaagaattcaccttaaatgaagtgttgactgcttccacaagtcaa
gtaatgatgaagagtaacggaaagagtgttcggataacaaatgagaccggagaagaagta
atgtctgacactttgtatggagacagtattaggcttcaacaagtcttggcagatttcatg
ctgatggctgtaaactttacaccatccggaggtcagctaactgtttcagcttccctgagg
aaggatcagctcgggcgttctgtgcatcttgctaatctagagatcaggttaacgcatacc
ggagctgggatacctgagtttttactaaaccaaatgtttgggactgaggaagatgtgtca
gaagaaggattgagcttaatggttagccggaaactggtgaagctgatgaatggagatgtt
cagtacttgagacaagctgggaaatcaagtttcattatcactgcggaactcgctgcagca
aacaagtag
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integrated database retrieval system
