Arabidopsis thaliana (thale cress): AT1G09880
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Entry
AT1G09880 CDS
T00041
Name
(RefSeq) Rhamnogalacturonate lyase family protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
AT1G09880
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
AT1G09880
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
837520
NCBI-ProteinID:
NP_001322798
TAIR:
AT1G09880
UniProt:
A0A1P8AV80
A0A5S9TJM1
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Position
1:complement(3208712..3213468)
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AA seq
697 aa
AA seq
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MFLFSSHVFKLVTTKDYRRHLLKQRGWVIALIMFMSVFEIAFCQNQTPEPESTQVLQLHY
QDRYVVMENRFLQLTLSNPEGFVTGIQYNGIDNVLAYYTNKEYDRGYWDVVWNFPGKKAK
KTKGTLDRIEATKMEVITQNDEKIELSFTRTWNTSSTTAVPVNIDKRFVMLQNSSGFYSY
AIFERLQGWPAVELDNMRLVFKLNKKKFHYMAISDDRQRYMPVPDDRVPPRGQPLAYPEA
VQLLDPIEPEFKGEVDDKYEYSMESKDIKVHGWISTNDSVGFWQITPSNEFRSAGPLKQF
LGSHVGPTNLAVFHSTHYVGADLIMSFKNGEAWKKVFGPVFIYLNSFPKGVDPLLLWHEA
KNQTKIEEEKWPYNFTASDDFPASDQRGSVSGRLLVRDRFISSEDIPANGSYVGLAAPGD
VGSWQRECKGYQFWSKADENGSFSINNVRSGRYNLYAFAPGFIGDYHNDTVFDISPGSKI
SLGDLVYEPPRDGSTLWEIGVPDRSAAEFYIPDPNPSFVNKLYLNHSDKYRQYGLWERYS
ELYPDEDMVYNVDIDDYSKNWFFMQVTRKQANGGYKGTTWQIRFQFDDKMKNVTGNFKLR
IALATSNVAELQVRVNDLSADPPLFRTEQIGRDNTIARHGIHGLYWLYSVNVPAASLHVG
NNTIYLTQALATSPFQGLMYDYIRLEYPDSINYITRS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtttctcttctcttcacatgtgttcaagctcgtgacgacaaaagattatcggagacac
ttattgaaacaaagaggatgggttattgctttgatcatgttcatgtctgtgtttgaaatt
gcattctgccaaaaccaaactcctgagccagaatcaacacaagtcttgcagctacattac
caagatcgatatgtggtaatggagaatagatttttacaattaactttatcaaatcctgag
ggtttcgtcaccggaatccagtataatggtatcgacaatgtgctcgcctactacaccaac
aaagaatatgatagaggttactgggacgtagtgtggaacttccctgggaaaaaggctaaa
aagaccaaaggcacactagaccggattgaagcaacaaagatggaagtgattacacagaac
gatgagaaaatagagctatcgtttacaaggacatggaatacatcttcaactacggctgtt
ccagtgaatatagacaagaggtttgtaatgctgcaaaactcgtccggattctacagttac
gccatcttcgaacggttacaaggatggcccgctgttgaactcgataatatgcgattagta
tttaagctaaacaagaaaaaatttcattacatggcgatttcagatgacaggcaaaggtac
atgcctgtgccagatgatcgggttccgcctcgtggtcagcctcttgcttatcccgaggca
gttcaacttcttgaccctatcgagcccgagtttaaaggagaggtggatgacaagtatgag
tactcaatggagagtaaagacataaaagttcatggatggataagcacaaatgattcagtt
gggttctggcaaatcactccaagcaatgagttccgttctgctgggcctctcaagcaattc
ctaggctcccatgtcggtccaactaaccttgcggtatttcacagcactcactatgttgga
gcagacctaatcatgagttttaaaaacggtgaagcatggaagaaagtatttggacctgtc
ttcatttatctcaactcttttcctaaaggagttgatcctctcttgctctggcatgaagcc
aagaaccagacaaagattgaagaagaaaagtggccttataacttcaccgcttcagatgat
tttcctgcatctgaccaaagaggatctgttagcggtagattactcgtaagagacagattc
ataagtagtgaggatatacctgcaaatggttcctatgtgggcttggctgcaccaggagat
gttggctcatggcaaagagaatgcaaaggttatcaattctggtctaaagcagacgaaaat
ggatctttttctatcaataatgtgagaagtggtcgttataatctctatgcatttgctccg
ggattcatcggtgattaccacaacgacaccgtttttgacatttctccaggctcaaagatt
agcttaggagacttagtgtatgagcctcctagagacggttcaactctatgggaaatcggt
gtaccagaccgaagcgctgcagagttctacattcctgacccgaatccaagctttgtaaac
aaactatacttaaaccattctgataaatatcgacaatacggattgtgggaacgctattca
gaactgtaccccgatgaagatatggtctacaatgttgatattgatgactactctaaaaac
tggttcttcatgcaagttacaaggaagcaagcaaatggaggatataaaggtacaacatgg
cagatcagatttcagttcgacgataaaatgaaaaacgtaaccggaaacttcaaactgcga
atcgctttagccacatcaaacgtagcagaattgcaggttcgggtgaacgatctttctgca
gaccctccattgtttaggacagagcaaataggaagggataatacaatcgcaaggcatggt
attcatggactatattggttatatagtgtgaatgttcctgctgcttctcttcacgtggga
aataacaccatatatctaactcaagcgctcgccacaagcccttttcaaggactcatgtat
gattatattcgtcttgaatatcctgattccatcaattatattactagatcatag
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