Arabidopsis thaliana (thale cress): AT1G09890
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Entry
AT1G09890 CDS
T00041
Name
(RefSeq) Rhamnogalacturonate lyase family protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
AT1G09890
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
AT1G09890
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
fn3_3
CBM-like
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
837521
NCBI-ProteinID:
NP_001321192
TAIR:
AT1G09890
UniProt:
A0A1P8AQ50
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Position
1:complement(3214049..3217603)
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AA seq
546 aa
AA seq
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MSYVKLQLHDKGNHVVMDNGIARVTLSKPDGIVTGIEYNGIDNLLEVLNEEVNRGYWDLV
WGGSGTAGGFDVIKGSNFEVIVKNEEQIELSFTRKWDPSQEGKAVPLNIDKRFVMLSGSS
GFYTYAIYEHLKEWPAFSLAETRIAFKLRKEKFHYMAVTDDRQRFMPLPDDRLPDRGQAL
AYPEAVLLVNPLESQFKGEVDDKYQYSCENKDITVHGWICTEQPSVGFWLITPSHEYRTG
GPQKQNLTSHVGPTALAVFISAHYTGEDLVPKFSEGEAWKKVFGPVFVYLNSSTDDDNDP
LWLWQDAKSQMNVEAESWPYSFPASDDYVKTEQRGNVVGRLLVQDRYVDKDFIAANRGYV
GLAVPGAAGSWQRECKEYQFWTRTDEEGFFYISGIRPGQYNLYAWIPGFIGDYKYDDVIT
ITSGPHFLSCFLLTPQNIFLLQFIICAGCYIYVEDLVYQPPRNGATLWEIGFPDRSAAEF
YVPDPNPKYINNLYQNHPDRFRQYGLWERYAELYPDKDLVYVVGSSDYRKDWFYAQVTRC
FSSSLA
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgttaagttgcagttgcatgataagggcaatcatgtggtgatggataatggc
attgcacgggttacattatctaagcctgatggaattgttaccggaatcgagtataatggc
atcgataacttgctcgaggttcttaatgaagaagtcaacagagggtattgggatctcgtt
tggggaggatcaggaacagctggcggctttgatgtaatcaaaggatcaaactttgaggtc
atagtgaagaatgaagaacagattgagctttctttcacaagaaaatgggatccatcacaa
gaaggcaaagcagtccctctcaatattgacaaaagatttgttatgcttagtggatcgtcg
ggattctacacttacgctatctacgagcatttaaaagaatggcctgctttctcacttgct
gaaacccgaattgccttcaagctcagaaaagagaagtttcattacatggcagtaacggat
gataggcagagattcatgccattgcctgatgaccggttaccggacagaggccaagctctg
gcttaccctgaagctgttctacttgttaatcctttagagtctcagttcaaaggagaggtt
gacgataagtaccaatattcgtgtgaaaacaaagacattactgtccacggatggatatgc
acagagcagccatcggttggtttctggctcataactcctagccatgagtatcgaaccggt
ggacctcaaaaacagaacttgacatctcatgttggacccacagctcttgctgtatttatt
agtgcacactacacaggggaagatctagtgccaaagtttagtgaaggagaggcatggaag
aaggtgtttggacctgttttcgtctatttaaactcgtctactgatgatgataatgaccct
ctttggctgtggcaagatgctaaatctcagatgaatgtggaagcagagagctggccttac
agttttccagcttcggatgattatgtgaaaacagaacaacgtggtaatgttgttggcaga
ctcctcgttcaagacaggtatgtagataaagatttcattgcagccaatagaggttatgtt
ggtttggctgtgcctggagctgctggttcatggcaaagagaatgcaaggagtatcaattt
tggacaagaacagatgaagaaggatttttttacattagtggtataaggccaggccagtat
aatctctatgcatggattcctggttttattggtgattataagtacgatgatgttatcaca
atcacctcaggtcctcattttctttcttgctttctattaactccccaaaacatttttttg
ttacaattcattatatgcgcaggatgttatatatatgtggaagatcttgtttatcaacct
ccaagaaatggagcaacattatgggaaattggttttccagatcgatctgctgcagagttt
tatgttcccgatcctaatccaaaatatatcaacaacctttatcaaaatcaccctgacaga
ttccggcaatatggtttatgggaaagatatgcagaactttatccggataaagacttggta
tatgtagttggctctagcgactatagaaaagactggttttacgctcaagtcactaggtgt
ttctcatcatctctggcgtga
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