Arabidopsis thaliana (thale cress): AT1G16230
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Entry
AT1G16230 CDS
T00041
Name
(RefSeq) Target SNARE coiled-coil domain protein
KO
K08503
syntaxin of plants SYP5
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
AT1G16230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT1G16230
Membrane trafficking [BR:
ath04131
]
SNARE
SNAP-25[C] (Qc)
STX8
AT1G16230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SrpI-like
DUF2278
Alpha_E3_glycop
Motif
Other DBs
NCBI-GeneID:
838192
NCBI-ProteinID:
NP_001319019
TAIR:
AT1G16230
UniProt:
F4I2U8
A0A654EB42
LinkDB
All DBs
Position
1:complement(5553467..5554489)
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AA seq
193 aa
AA seq
DB search
MASLCDSWIREQNETLKLSEEIDGMILERSSLAETSSYALRHASSMRRKITILATRVQTL
KYLLAESQGKSISGKEMSRRKGTFENLRSKANQMASALDMLKFSNIDILLRPEKDDIMSR
VIGLDNQGIVGLHRQVMKEHDEALDMLEETVMRVKHNALVMNEQIGLQTRLIDGLDHHVD
VSDSGVRVIHIRA
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggcttctttgtgtgattcatggatcagagaacagaatgagactttaaaactctcagag
gagattgatggaatgatattagaaagaagttcactggccgaaacatcatcttatgctcta
cgtcatgcttcatcgatgagaagaaagatcaccattttggcaacccgagttcagactcta
aagtatcttcttgctgaaagtcaaggaaaatctatttcagggaaagagatgagccggcgc
aagggtacgtttgagaatctgagatcaaaagcaaatcagatggcctctgcattggacatg
ttaaaattttccaatattgacatcttgctgaggccagaaaaagatgatatcatgagcaga
gttattggcttggataaccaaggaattgttggattacaccgacaagttatgaaagaacat
gacgaagcacttgatatgttggaggaaacagtcatgcgtgtaaaacacaatgcgctagtt
atgaatgagcagattggcttgcagacaaggcttatcgatggcttagaccaccatgtggat
gttagtgactctggcgtaagggtaatacatattcgagcttaa
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integrated database retrieval system
