Arabidopsis thaliana (thale cress): AT1G17370
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Entry
AT1G17370 CDS
T00041
Symbol
UBP1B
Name
(RefSeq) oligouridylate binding protein 1B
KO
K13201
nucleolysin TIA-1/TIAR
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G17370 (UBP1B)
03041 Spliceosome [BR:
ath03041
]
AT1G17370 (UBP1B)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
AT1G17370 (UBP1B)
Spliceosome [BR:
ath03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
AT1G17370 (UBP1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_5
S1CSD-TOTE-2
Motif
Other DBs
NCBI-GeneID:
838309
NCBI-ProteinID:
NP_564018
TAIR:
AT1G17370
UniProt:
Q9LQI9
A0A5S9UUW5
LinkDB
All DBs
Position
1:complement(5951542..5955143)
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AA seq
419 aa
AA seq
DB search
MQRLKQQQQQQQVMMQQALMQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGN
IHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQP
IKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSR
GFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGV
SEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFG
FVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTASNPLPPPAPAPIPGFSAS
DLLAYERQLAMSKMAGMNPMMHHPQGQHAFKQAAMGATGSNQAIYDGGYQNAQQLMYYQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggttgaagcagcagcagcagcagcaacaagttatgatgcagcaagctcttatg
cagcaacagtctctctaccatcctggtctccttgccccgccacagatagaaccaatccca
agtggaaatctcccccctggttttgatccaagtacttgccgcagtgtgtacgttggaaac
atccatattcaggtgacggaacctctgcttcaagaggtttttgctggcactggtcctgta
gaaagctgtaaactaattaggaaagaaaagtcttcttatgggtttgtgcactactttgat
cgaagatcggctggtcttgcaatcctttctctcaatggaaggcatttgtttgggcaacct
atcaaggttaactgggcttatgcgagtggccagagggaggatacatcaagtcacttcaat
atatttgttggggatttgagtccggaggttactgatgcaatgctgtttacttgcttctct
gtctacccgacttgctcggatgcaagagttatgtgggatcagaaaactgggcgttcaaga
ggatttggatttgtttccttccgtaaccaacaggatgcccagactgcaatagatgagata
actgggaaatggcttggttccaggcagatacgttgcaactgggcgacaaagggagccact
tctggtgaggacaaacagagctctgattccaaaagcgtcgtggaacttaccagtggtgtc
tcggaggatggtaaagatactactaatggtgaagctcctgagaacaatgctcagtacaca
actgtttacgtcggtaatcttgctccagaggtgtcccaggttgatcttcaccgccacttc
cattcccttggtgctggggtcatagaggaagtccgtgttcaaagagacaaaggtttcgga
tttgtgagatactctactcatgtagaggcagccctcgctattcagatgggaaacacacat
tcctaccttagtggcaggcaaatgaagtgttcttggggaagcaagccaactccagcagga
acagcttcaaacccgcttcctccaccagctcctgcaccaatcccgggattctcagcgagt
gatctcttggcttacgagaggcaactagcgatgagcaagatggcaggaatgaatccgatg
atgcatcacccgcagggacaacatgcttttaaacaagctgcaatgggagccactggttca
aaccaggcaatatatgacggtggttaccagaacgcgcagcagctcatgtactaccagtaa
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