KEGG T00041: AT1G17640

Arabidopsis thaliana (thale cress): AT1G17640

Entry

AT1G17640         CDS       T00041

Name

(RefSeq) RNA-binding (RRM/RBD/RNP motifs) family protein

K12741

heterogeneous nuclear ribonucleoprotein A1/A3

Organism

ath Arabidopsis thaliana (thale cress)

Pathway

ath03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:ath00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT1G17640
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT1G17640
   03041 Spliceosome [BR:ath03041]
    AT1G17640
Messenger RNA biogenesis [BR:ath03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     AT1G17640
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     AT1G17640
Spliceosome [BR:ath03041]
Common components
  Common spliceosomal components
   hnRNP proteins
    AT1G17640

SSDB

Motif

Pfam:

RRM_1 RRM_7 RRM_PARP14_3

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

TAIR:

UniProt:

LinkDB

Position

1:complement(6067086..6069392)

AA seq 369 aa
MDYNSDRGYDDSYHHHVHDEQLPQSDFEVETFDDRRNGGAAVDTGGIQMKHSVDHRHSSS
SMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVA
EKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVY
GDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGR
DNSFRSYGASGKYDQEDSYSGKANEDYSMYSGYGGYGGYGAYAGNSMVNPAGFYGYGGGY
GYGYGYGGQMFNMGYGAGGYSHMGSGYGVAAAAAYGGGKSHGNGNNGSSSGKGNGTNGSG
PDRYHPYQK

NT seq 1110 nt +upstreamnt +downstreamnt
atggattataactcagatcgtggttatgatgactcttaccatcatcacgtacacgacgaa
caattaccacaatcggattttgaagtggagacctttgatgaccggaggaacggtggtgca
gccgttgatactggtgggattcagatgaagcattccgttgaccatcgccattcttcttcg
tccatgtcttctcctgggaaactgttcgtaggtggagtttcttgggaaacaactgcagaa
acttttgcgaattactttggaaagtttggagaagttgtcgactctgtaatcatgacagat
agaataactgggaacccaagggggtttgggtttgtcacttttgctgattcagctgttgct
gagaaagttttggaggaagatcatgtaatagatgaccgaaaggttgatctgaaaaggaca
cttcctagaggggacaaggatactgatatcaaagcggtatcaaagaccaggaaaatcttt
gttggtggacttccaccacttttggaagaagatgaactgaagaattatttctgtgtatat
ggtgacataattgagcatcagatcatgtatgaccaccacacgggaaggtcaaggggattt
ggttttgtaaccttccagaccgaagattctgttgatagacttttctccgatggaaaagtt
cacgagctcggtgacaaacaggtggaaataaaaagggccgaaccaaagagaaccgggaga
gataacagctttcgatcctatggtgctagtggcaagtatgatcaggaagatagttatagt
gggaaagctaatgaagattacagtatgtattcgggttatggtggttatggcggttatgga
gcctacgcagggaactccatggttaaccctgctggtttttatggttatggtggtgggtat
ggctatggttatggctatggaggtcaaatgttcaacatgggctatggagctggcggttat
agccatatgggtagtggctatggtgttgctgcggctgctgcttatggaggtggaaaatct
catggaaacggaaataacggctcaagtagtggcaaaggaaatgggactaatggttctggg
ccagatcgataccatccttatcaaaagtag

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