Arabidopsis thaliana (thale cress): AT1G27820
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Entry
AT1G27820 CDS
T00041
Name
(RefSeq) Polynucleotidyl transferase, ribonuclease H-like superfamily protein
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G27820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G27820
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT1G27820
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AT1G27820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
YEATS
Motif
Other DBs
NCBI-GeneID:
839676
NCBI-ProteinID:
NP_174103
TAIR:
AT1G27820
UniProt:
Q9SFX6
A0A7G2DWE9
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Position
1:9691628..9692560
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AA seq
310 aa
AA seq
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MKQISSGEVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFN
VDNTHLIQLGFTLFDRRGFAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGI
GIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLG
KFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKLTFDLLN
SRKQSVRRVDHQQFQLEQQQHQQFMMTRCYIPIPMPIPRPRPVMFAAHHQNPYFGGGYFR
MPVQGMNYVL
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaattagtagcggtgaagtttggagatggaacaaggaagtagagatgaattcg
ataagagattgtttgaaacattgtagttccatcgctatcgacacagagtttcccggatgc
ttaaaggagactccgatggacgcgagtgaggaaattcgttacagagacatgaagttcaat
gtggacaacacccatctcatccagttaggtttcacgctattcgacagaagaggattcgct
aaaacctgggaaataaacttgtcagatttcgacgaacataagtgcttcaaaaacgataag
tccattgcgtttctgaaaagcaatggtctcaatctggacaagatcagagaggaaggtatt
ggaatcgatgaattctttagagacttttctcagattctcacggagaaggacggaaagata
acttgggtgaattttcaaggctcttacgacaatgcttatctcgttaaaggcttaacggga
gggaaaccgttaccggagactaaggaagagtttcacgagaccgtccagcagcttttggga
aagtttgtttttgacgtaaagaaaatcgctgaatcatgcagcggactaagtagccaattc
ggactacagagaatagctgatgtgttgcagatgaaacgtgttggaaaagctcatcacgct
ggctcagacagtgaattgacggctcgtgtcttcactaagttgactttcgatttgcttaat
agtagaaagcagagtgtaagacgagttgatcatcagcaatttcaactagagcagcaacag
catcagcagtttatgatgactagatgttacatcccgataccgatgccgataccgagaccg
agaccggtgatgtttgctgctcatcaccagaacccgtattttggtggtggttactttagg
atgccggtccaaggaatgaactatgttttgtga
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