Arabidopsis thaliana (thale cress): AT1G27890
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Entry
AT1G27890 CDS
T00041
Name
(RefSeq) Polynucleotidyl transferase, ribonuclease H-like superfamily protein
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G27890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G27890
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT1G27890
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AT1G27890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
839682
NCBI-ProteinID:
NP_174110
TAIR:
AT1G27890
UniProt:
Q9C6M9
A0A7G2DW67
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Position
1:complement(9714136..9715176)
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AA seq
302 aa
AA seq
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MGEVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTH
LIQLGFTLFDRRGITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEF
FRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFD
VKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKLTFDLLNSRKQC
VRRVDHQQYQLEQQQLMMTRCYIPIPIPIPRPRSVMFAAHHPNPYFGGGYFGMPVQGRNY
VL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtttggagatggaacaaggaagtagagatggattcgataagagattgtttg
aaacattttagttccatcgctatcgacacagagtttcccggatgcttaaaggagactccg
atggacgcgagtgaggaaattcgttacagagacatgaagttcaatgtggacaacacccat
ctcatccagttaggtttcacgctattcgacagaagaggaatcactaaaacctgggaaata
aacttgtcagatttcaacgaacataagtgcttcaaaaacgataagtccatagcttttctc
aaaagcaatggtctcaatctggacaagatcggagaggaaggtattggaatcgaagaattc
tttagagacttttctcagattctcaaggagaaggacggaaagataacttgggtgaatttt
caaggctcttacgacaatgcttatctcgttaaaggcttaacgggagggaaaccgttaccg
gagactaaggaagagtttcacgagaccgtcgagcagcttttgggaaagtttgtttttgac
gtaaagaaaatcgctgaatcatgcagcggactaagtagccgattcggactacagagaata
gctgatgtgttgcagatgaaacgtgttggaaaagctcatcacgctggctcagacagtgaa
ttgacggctcgtgtcttcactaagttgactttcgatttgctcaatagtagaaagcagtgt
gtaagacgagttgatcatcagcaatatcaactagagcagcagcagcttatgatgactaga
tgttacatcccaataccgatacctataccgagaccgagatcggtgatgtttgctgctcat
cacccgaacccgtattttggtggtggttactttgggatgccggtccaaggaaggaactac
gttttgtga
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