Arabidopsis thaliana (thale cress): AT1G32490
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Entry
AT1G32490 CDS
T00041
Symbol
ESP3
Name
(RefSeq) RNA helicase family protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT1G32490 (ESP3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT1G32490 (ESP3)
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AT1G32490 (ESP3)
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AT1G32490 (ESP3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
PWI
SRP54
Flavi_DEAD
AAA_16
TsaE
T2SSE
Cas3-like_C_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
840143
NCBI-ProteinID:
NP_174527
TAIR:
AT1G32490
UniProt:
Q8VY00
A0A178W3A5
LinkDB
All DBs
Position
1:complement(11742006..11749788)
Genome browser
AA seq
1044 aa
AA seq
DB search
MASNDLKTWVSDKLMMLLGYSQAAVVNYLIAMAKKTKSPTELVGELVDYGFSSSGDTRSF
AEEIFARVPRKTAGVNLYQKHEAEAAMLVRKQKTYALLDADDDEDEVVVEKKSSVSESRK
SDKGKKRFRKKSGQSDESDGEVAVREDSRHVRRKVSEEDDGSESEEERVRDQKEREELEQ
HLKDRDTARTRKLTEQTLSKKEKEEAVRRANALEKDDLYSLRKVSRQEYLKKREQKKLDE
LRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKKRTQDEDNVEEYRIPDAYDQEGGV
DQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGAKNKQASDDYQFVFED
QINFIKESVMAGENYEDAMDAKQKSQDLAEKTALEELQEVRRSLPIYTYRDQLLKAVEEH
QVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVAQEMGVKLGHE
VGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEPDLASYSVVIVDEAHERTLSTDILFGLV
KDIARFRPDLKLLISSATMDAEKFSDYFDTAPIFSFPGRRYPVEINYTSAPEADYMDAAI
VTILTIHVREPLGDILVFFTGQEEIETAEEILKHRIRGLGTKIRELIICPIYANLPSELQ
AKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLITPISK
ASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSLGIHDLI
NFDFMDPPPAEALVKSLELLFALGALNKLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKC
SDEIISIAAMLSIGGSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKETNFST
QWCYENYIQVRSMKRARDIRDQLEGLLERVEIDISSNLNELDSVRKSIVAGFFPHTAKLQ
KNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIELAPH
YYQLKDVEDAASKKMPKGAGKAAM
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaatgatttgaagacttgggtttcggataagctgatgatgctacttggctac
tctcaagcggctgttgttaactatctcattgcaatggctaaaaaaacaaaatcaccaact
gaacttgtgggagagttggtggattacgggttttcgtcttctggtgatactcgttcgttt
gcagaagaaatttttgccagagttccccgtaaaactgctggtgtaaatctctaccaaaaa
catgaagcagaggcagcaatgctagtgaggaagcagaaaacatatgctcttttagatgct
gatgatgatgaagacgaagttgttgtggagaaaaaatcttcagtttctgaatctagaaaa
tcagataagggcaagaaaaggtttagaaagaaaagtgggcagtcagatgaaagtgatggc
gaggtggccgttagagaggatagtagacacgttagaagaaaggtttctgaagaggatgat
ggttctgagtcagaagaggaaagagtgcgtgaccaaaaggagagagaagaactggagcag
catttaaaagatcgtgatactgcacggacacgaaagctaacagagcaaacgttgtcaaag
aaagagaaagaagaggctgttcgaagagcaaatgctttggagaaggatgatttatattcc
ttaaggaaagtctcgagacaagaatacttaaagaagagagaacaaaagaaactggatgaa
ctaagggatgagatagaagatgaacaatatcttttcggaggtgaaaagctcacagaaacg
gagcttcgtgagtttaggtacaagaaagagctttatgacctcgtgaagaaaagaacacaa
gatgaagataacgtcgaggagtatagaattccagatgcttatgatcaagagggaggtgtt
gatcaggagaagaggttttctgttgctgttcaacgatacagggacctggattcaacagag
aaaatgaatccattcgcagagcaagaagcttgggaggaccatcagattggaaaagcaaca
ttaaaatttggtgcaaagaataagcaagcctcagacgattatcagtttgtgtttgaagac
caaataaacttcataaaggaatctgtcatggctggtgaaaattatgaagatgctatggat
gcaaaacaaaaatctcaagatttggcagagaaaacagctttagaggaacttcaggaagtc
agaagaagtctgccgatttatacgtatcgtgatcaactgcttaaggctgtggaagagcat
caggttcttgtcattgtgggagacactggttcaggaaaaacgacacaaataccacaatat
ctccatgaagctggttacacaaagcgtggaaaggttggttgtacgcagccccgaagagtt
gcagctatgagtgttgctgcccgtgtggctcaagagatgggtgtcaaactcggacatgag
gttggctattccattcgatttgaggattgtacttcagacaaaacagttctgaagtatatg
actgatggaatgcttttgcgcgagctgcttggtgagccagacctggccagctacagtgtc
gttattgtggatgaggcacatgaaaggaccttgtcaaccgatatactgtttggattagtc
aaggatatagcgcggtttcgacctgatttgaagttgttgatatctagtgcaacaatggat
gcagaaaaattttctgattattttgatacagccccgatttttagttttcctggaagaagg
tatccagttgaaatcaactatacaagtgcacctgaagctgattacatggacgcagccata
gttactatccttacgatccatgtgagggagccacttggagatatattggtcttcttcact
ggtcaagaggaaattgaaactgcagaagagatcttgaagcacaggataagaggtttgggt
acaaagatccgtgaattaatcatatgcccaatttacgcaaatcttccaagtgaactccaa
gcaaaaatatttgagccaactccagaaggggcacgtaaagttgtcctagcaacaaatatc
gccgaaacatcattgacaattgatggtataaagtatgttgttgatccaggctttagcaag
atgaagtcatataacccgaggacagggatggaatctttgcttattactcctatctctaag
gcttctgcaactcaacgagctggtcgtgctggaagaacaagtccagggaagtgttatcgt
ctgtacactgcgtttaattacaacaatgacttggaggaaaacacggtgccagaagtacag
aggacgaatcttgctagtgtggtgcttgctttgaagagtcttggaattcatgatctcata
aacttcgatttcatggaccctccacctgctgaagcacttgtaaagtctttagaactgctc
tttgctctgggtgctctaaataagctcggggaattgactaaagctggtagaaggatggca
gagttcccccttgatccaatgctgtcgaaaatgattgttgtttctgacaagtataagtgc
tccgatgagataatatcaatcgctgctatgttgtcaattggtggctctatcttctaccgt
cccaaggacaaacaagttcatgcggacaacgcaagaatgaatttccacaccgggaatgtc
ggtgaccatattgctttgctaaaggtttacagttcatggaaggaaacaaacttctctact
cagtggtgctacgagaactacattcaggtccggagcatgaaaagagccagagatatccgt
gatcaattggagggacttctcgaaagggtggaaatagatatcagctcaaacctgaatgaa
ttggattcagttagaaaatccatcgtagccgggttttttccgcacactgcaaagctacag
aagaatggatcgtaccgaacagtgaaacatccccagacagtgcacatacatcccaattcg
ggcttatctcaggtattgccgagatgggttgtatatcacgaactagtacttacgtccaag
gaatacatgcgacaggtaacagagttgaaaccagagtggttgattgagttagctcctcac
tactaccagctcaaggacgttgaagacgctgcatcaaagaaaatgcccaaaggagctgga
aaagctgcaatgtaa
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integrated database retrieval system
