Arabidopsis thaliana (thale cress): AT1G42470
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Entry
AT1G42470 CDS
T00041
Name
(RefSeq) Patched family protein
KO
K12385
Niemann-Pick C1 protein
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
AT1G42470
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
AT1G42470
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ath02000
]
AT1G42470
Transporters [BR:
ath02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
AT1G42470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Folate_rec
MMPL
Motif
Other DBs
NCBI-GeneID:
840851
NCBI-ProteinID:
NP_001319159
TAIR:
AT1G42470
UniProt:
F4I9G5
LinkDB
All DBs
Position
1:15926676..15935529
Genome browser
AA seq
1260 aa
AA seq
DB search
MQILFVGYGVEAKQSAGYCAMYDICGARSDGKVLNCPFNIPSVKPDDLLSSKIQSLCPTI
TGNVCCTETQFDTLRSQVQQAIPFIVGCPACLRNFLNLFCELTCSPDQSLFINVTSTTKV
KNNSTVDGIQYYITDDFGAGMYESCKNVKFGSSNSRALDFLGAGAKNFKEWFTFIGQKAG
VNLPGSPYGIAFLPTPPVSSGMRPMNVSIYSCGDESLGCSCGDCPSAATCSSKAEVPTQK
KHSCSIKIGSLEVKCVDFILAILYIVLVSLFLGGGLLHPVRGKKKTSQMGTLSEASGERN
SVNQQKPDTIQSQMLQNTPQRNWGQLSTVQGHLANFYGKYGIWVARHPTLVLCLSVSVVL
LLCVGLIRFKVETRPDKLWVGSGSRAAEEKQFFDTHLAPFYRIEQLIIATVQTSSHEKAP
EILTDDNIKLLFDIQKKVDGLRANHSGSMVSLTDICMKPLGEDCATQSVLQYFKMKPENY
DDYGGVDHVKYCFEHFTSTESCLSAFKGPLDPTTALGGFSGNSFSEASAFLVTYPVDNFV
DNKGNKTEKAVAWEKAFIQLAKDELLPMVQAKNLTLSFSSESSIEEELKRESTADVITIA
ISYLVMFAYISLTLGDSPRLKSFYITSKVLLGLSGVLLVMLSVLGSVGFFSAVGMKSTLI
IMEVIPFLVLAVGVDNMCILVHAVKRQEQELPLERRISNALMEVGPSITLASLAEILAFA
VGAFIKMPAVRVFSMFAALAVLLDFLLQITAFVALIVFDFRRTEDKRVDCFPCIKTSKSS
ISAEKGVGQRKAGLLTRYMKEVHAPVLSHWIVKIVVIAFFFGLAMAGIALSTRIEPGLEQ
QIVLPQDSYLQGYFNNISTYLRIGPPLYFVLKNYNYSSESRHTNQLCSINKCNPNSLLNE
IARASLTPELSYIAKPAASWLDDFLVWLSPEAFGCCRKFTNGTFCPPDDQPPCCPPGQTS
CGLSEVCKDCTTCFRHADLSSDRPSTTQFKEKLPWFLNALPSADCAKGGHGAYSSSVDLQ
GYANGIIQASSFRTYHTPLNKQVDFVNSMRAAQEFSAKVSRSLKMEIYPYSVFYMFFEQY
LDIWKTALINLSIAIAAVFVVCLIITCSFWSSAIILLVIAMIIIDLLGVMAVFHIQLNAL
SVVNLIMSVGIAVEFCVHITHAFSISTGDRNHRMKEALGGMGASVFSGITLTKLVGVIVL
GFSRSEVFVVYYFKMYLALVLLGFLHGLVFLPVFLSMFGPAPRHVEGERQDHRPSVSSVP
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atgcagattctgtttgttggttatggagtggaagcaaaacaatcagcaggatattgtgct
atgtatgatatctgtggagcaagaagtgatgggaaagtactaaattgccctttcaacatt
ccttctgtgaagcctgatgatttgttatcttcaaagattcaaagcttatgtccaacaatc
actggcaatgtttgttgcacagagactcaatttgatacattacgttcgcaagttcaacag
gctattccttttattgttggttgtccagcatgtttgaggaactttctgaatcttttttgt
gaacttacttgttctccggatcagagtttgtttatcaatgtaacttctactacaaaggtc
aagaataattctactgtagatggaattcagtactatataactgatgattttggagctggg
atgtatgaatcttgcaaaaatgtaaaatttggtagctcgaatagccgagctttagacttt
ctcggagccggtgcaaagaactttaaggagtggtttacatttattggtcagaaagcgggt
gtcaatttgccaggctcaccgtatgggatcgcttttttgccaacaccgcctgtgtcgtct
ggaatgaggcctatgaatgtgtctatttattcatgtggtgatgagtctcttggctgttct
tgtggtgattgtccttctgcagctacttgctctagtaaagcagaagtgcctactcagaaa
aaacattcttgctctatcaagattggatcacttgaggtgaaatgtgttgatttcatatta
gccattttgtatattgtattggtttcattgtttcttggaggaggtttacttcacccagta
aggggtaagaaaaagacctcacagatgggaacattgtcagaagctagtggagaacgaaat
tctgttaatcagcaaaaaccagacactattcaatcgcagatgttacaaaatactccacag
agaaactggggtcagctatcgacagtacaaggacacttggccaacttttacgggaagtat
gggatttgggtagcaagacaccccactcttgttttgtgtttgtcagtctctgtagttctt
ctcctttgtgtgggtctgatccggttcaaagttgagacacggcctgataagctgtgggta
ggatcaggtagcagagctgctgaagagaaacaattctttgacactcatcttgctcctttc
tacagaattgaacagctaataatagcaacagttcaaacatcttctcacgaaaaggcgcca
gagattttgacagatgacaatattaagttactttttgacatacaaaagaaggtcgatgga
cttcgggcaaatcactcaggttcaatggtttctctgacagatatctgcatgaaacccctg
ggagaggattgtgccacacagagtgttctgcagtatttcaaaatgaaaccagaaaattat
gacgactatggaggcgttgatcatgttaaatattgttttgagcatttcacctcgacagaa
tcatgtttgagtgcatttaagggtccacttgatccaactactgcactgggaggtttctca
gggaacagttttagtgaggcttctgcttttcttgtgacttatcctgtggacaattttgtt
gacaataaaggtaacaaaactgagaaagcagtagcatgggagaaagcctttatccaactg
gccaaggatgagttgttgccaatggttcaagcaaaaaatttaactctttctttctcgtcg
gaaagttctattgaagaagaactgaaaagagaaagcacagcagatgtcataactatagcc
ataagttatcttgtcatgtttgcctatatatcactcacacttggagattcacctcgctta
aagtccttttacattacatccaaggttctgcttggtctatctggtgttctacttgtcatg
ctttctgtccttggctctgtaggatttttcagtgccgttgggatgaaatcgactctaatc
ataatggaagttataccttttcttgttttggctgtcggtgttgataatatgtgcatcctg
gttcatgctgtcaagaggcaagagcaagagctgcctttggaaagaagaattagcaatgcc
cttatggaagttggaccatcgattactctagcaagtttagccgagattttagctttcgct
gttggtgctttcattaaaatgccagctgttcgagtattctccatgtttgctgcattggct
gtccttttggactttcttctccagattaccgcgtttgtagctttgatagtttttgacttc
cgacggacggaggataagcgagttgattgcttcccgtgtattaagacatcaaaatcatct
attagtgctgaaaaaggggttggtcaaagaaaagctggccttttgactcgatatatgaag
gaagtccatgcacctgttcttagccattggatagtcaaaatagtggtcattgccttcttc
tttggcttagcaatggctggaattgcattgtcgactcgtattgagcctggtttggagcaa
cagattgttcttcctcaagactcatatcttcagggttacttcaacaatatttctacatat
cttcgaatcggtccacctttatactttgttctgaagaattataactacagctcagaatca
agacatacaaatcaactttgttccattaacaagtgtaatcctaactctcttttaaatgag
attgcaagggcttctttgactccggaactaagctacatagctaagccagctgcttcgtgg
ctcgatgactttcttgtgtggttatctcccgaggcgtttggatgttgcagaaagtttaca
aatggtaccttttgcccccctgatgaccagcctccttgttgccctcctggtcaaacgagc
tgtggcctaagtgaagtatgcaaagattgtaccacgtgcttccggcatgcagatttaagt
agtgaccgcccttccacaacacaattcaaagagaaacttccttggttcctcaacgcgctc
ccttctgctgattgtgctaaaggtggacatggtgcttattctagtagtgttgatttgcaa
ggctatgcaaatggtatcattcaagcttcatcgttccgtacttatcacacaccccttaac
aagcaggttgactttgttaattcaatgagagctgctcaagaatttagtgcaaaagtttcc
cgttccttaaagatggagatatatccttattcagtgttttatatgttctttgagcaatat
cttgacatatggaaaactgcattaatcaacctctccatagccatcgctgccgtgtttgtc
gtgtgtttaatcatcacatgcagcttttggagctcggcaattattttgctggtgatcgcg
atgatcattattgatctcctgggagttatggcagtctttcatatccagctaaacgcacta
tcggttgtaaatctaatcatgtccgtgggcatagcggttgagttttgcgtacacataaca
cacgctttctcgataagcactggggacagaaaccatcggatgaaagaggcgttgggtggg
atgggagcttcagttttcagtggaattacattgacgaaactagttggggtgattgtgctc
ggtttctcaagatcagaagtctttgtggtgtactacttcaagatgtatttggcactagtc
cttctcggtttcttacacggccttgtatttttaccggtgttcttgagcatgtttggtcca
gctccaagacatgtagaaggggaaaggcaagatcatcgaccttcggtttcatcagtacct
tag
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