Arabidopsis thaliana (thale cress): AT1G48050
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Entry
AT1G48050 CDS
T00041
Symbol
KU80
Name
(RefSeq) Ku80 family protein
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AT1G48050 (KU80)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT1G48050 (KU80)
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
AT1G48050 (KU80)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
DUF5041
Motif
Other DBs
NCBI-GeneID:
841223
NCBI-ProteinID:
NP_564520
TAIR:
AT1G48050
UniProt:
Q9FQ09
LinkDB
All DBs
Position
1:17723382..17727243
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AA seq
680 aa
AA seq
DB search
MARNREGLVLVLDVGPAMRSVLPDVEKACSMLLQKKLIYNKYDEVGIVVFGTEETGNELA
REIGGYENVTVLRNIRVVDELAAEHVKQLPRGTVAGDFLDALIVGMDMLIKMYGNAHKGK
KRMCLITNAACPTKDPFEGTKDDQVSTIAMKMAAEGIKMESIVMRSNLSGDAHERVIEEN
DHLLTLFSSNAIAKTVNVDSPLSLLGSLKTRRVAPVTLFRGDLEINPTMKIKVWVYKKVA
EERLPTLKMYSDKAPPTDKFAKHEVKVDYDYKVTAESTEVIAPEERIKGFRYGPQVIPIS
PDQIETLKFKTDKGMKLLGFTEASNILRHYYMKDVNIVVPDPSKEKSVLAVSAIAREMKE
TNKVAIVRCVWRNGQGNVVVGVLTPNVSERDDTPDSFYFNVLPFAEDVREFPFPSFNKLP
SSWKPDEQQQAVADNLVKMLDLAPSAEEEVLKPDLTPNPVLQRFYEYLELKSKSTDATLP
PMDGTFKRLMEQDPELSSNNKSIMDTFRGSFEVKENPKLKKASKRLLRDKPSGSDDEDNR
MITYDAKENKIDIVGDANPIQDFEAMISRRDKTDWTEKAITQMKNLIMKLVENCTDEGDK
ALECVLALRKGCVLEQEPKQFNEFLNHLFKLCQERNLSHLLEHFMSKKITLIPKSEAADS
DIVDENAGDFIVKQESMLES
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcacgaaatcgggagggtttggttttggtgctcgatgtaggtcctgcgatgcgtagt
gttctccctgatgttgaaaaggcatgttcaatgctacttcagaagaagttgatttacaac
aagtatgatgaagttggaattgttgtctttggaactgaagaaactggaaacgagcttgct
agggagataggtggatatgagaatgttacagttttaaggaatatcagagttgttgatgaa
ttagcggcagagcatgtgaagcagcttcctcgaggaactgtagctggagactttcttgat
gctttaattgttgggatggatatgcttataaagatgtatggtaatgcacacaaggggaaa
aaacggatgtgtctcatcacgaacgcagcttgtcctaccaaagatccatttgaagggacg
aaagatgatcaagtcagcactattgctatgaaaatggctgcggagggaattaagatggag
agcattgttatgaggtctaatttaagtggtgatgctcatgagagagtaatagaggagaat
gatcatctgttgactttattctccagcaacgcgattgccaaaacagtgaatgttgatagt
ccactctcactgcttggttccttaaagacccggagggtggctccagttactttgttcagg
ggtgaccttgaaattaacccaacaatgaagattaaggtgtgggtttataagaaagtggct
gaggagagacttcccactctaaaaatgtattctgacaaagcgcctccaactgacaagttt
gccaaacatgaagtaaaagttgattatgattacaaagttactgcagaatctactgaggtt
attgctccagaagaaaggatcaagggctttcgctatggacctcaggttattcctatatca
ccagatcagatagaaacactcaagtttaaaactgacaaaggcatgaagcttctgggattt
actgaggcgtcaaatatactgcgacattattacatgaaagacgtgaatatagttgttcct
gatccaagcaaagaaaaatctgtacttgccgtatctgctattgcaagagaaatgaaagaa
acaaacaaggtagcaattgtacgatgtgtctggagaaatggacaaggcaatgtggttgtt
ggggtcctgactccaaatgtgtctgaaagagatgatactcctgattcgttttacttcaat
gtgctacctttcgccgaggatgtccgcgagtttccatttccttctttcaacaagcttcct
tcatcatggaagccagatgaacaacaacaagcagtagcagataatttggttaagatgctt
gaccttgcaccttctgcggaagaggaagtactaaagcctgatcttactcctaacccggtt
ttgcagcgcttttatgaataccttgagttgaaatcgaaatccacggatgctactttacct
ccaatggatggaactttcaagagacttatggagcaggaccctgaactctcttccaacaat
aaatccataatggacacgtttcgtggaagttttgaagtcaaggagaatccaaagttgaag
aaggcttctaagagattgttgcgggataaaccatcgggttcagatgatgaagacaatcgc
atgattacttatgacgccaaagagaacaaaattgatatagtcggagatgcaaacccaatt
caagattttgaagccatgatatcccgcagagataaaactgactggaccgagaaagcaatc
acacaaatgaaaaacctaataatgaagcttgtagaaaattgtaccgacgagggtgacaaa
gcattggaatgtgtactcgctcttcgtaaaggctgcgtcttggagcaggagccaaagcaa
ttcaatgagttcttgaaccatctattcaagttatgccaagaaagaaacttatctcatctt
ctcgaacatttcatgtcaaagaagatcactttgattcccaaatccgaagcagcggacagt
gatatagtagacgagaacgctggggatttcatcgttaaacaagagtcaatgctcgagagc
taa
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