Arabidopsis thaliana (thale cress): AT1G49760
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Entry
AT1G49760 CDS
T00041
Symbol
PAB8
Name
(RefSeq) poly(A) binding protein 8
KO
K13126
polyadenylate-binding protein
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT1G49760 (PAB8)
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G49760 (PAB8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G49760 (PAB8)
03041 Spliceosome [BR:
ath03041
]
AT1G49760 (PAB8)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AT1G49760 (PAB8)
mRNA cycle factors
Stress granule specific factors
AT1G49760 (PAB8)
Spliceosome [BR:
ath03041
]
Complex C
Other components
Complex C specific factors
AT1G49760 (PAB8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_Nup35
SET_assoc
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
841399
NCBI-ProteinID:
NP_564554
TAIR:
AT1G49760
UniProt:
Q9FXA2
A0A5S9WNH7
LinkDB
All DBs
Position
1:18416474..18420111
Genome browser
AA seq
671 aa
AA seq
DB search
MAQIQHQGQNANGGVAVPGAAAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQ
LFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMY
SVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQY
DTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEEL
NKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQ
KKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMR
DPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMR
PVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIPQPGFGYQQQLVPGMRPGGSPMPN
FFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGRMYRYPQRDVNT
MPGPTQNMLSVPYDVSSGGGVHHRDSPTSQPVPIVALATRLANAAPEQQRTMLGENLYPL
VEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQQAGGAADQL
ASLSLGDNIVP
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattcagcatcagggtcaaaatgccaatggtggtgtagctgttcccggtgct
gctgcggctgaagctgcggcggctgcggctggagctgcggcggcggctgccggagctgcg
cagcaagggacgacgtctttatatgtcggtgatctggatgcgaccgtgacggattcacag
ctgtttgaggcgtttacccaagcgggtcaggtggtttctgtccgtgtctgcagagacatg
acgactcggagatctctaggctatggctacgttaactatgcaactcctcaagatgcttcc
agggcactgaatgagctgaatttcatggctcttaatggaagggctataagagttatgtat
tctgttcgtgatccaagtctccgtaagagcggagttggtaatatatttattaagaatctt
gacaaatcaattgatcacaaagcacttcacgagacattttcagcctttggtcccattcta
tcttgcaaagtggccgttgatccctctggtcagtcgaaaggctatgggtttgtgcagtac
gacactgatgaagcagctcagggagccattgataaactgaatggaatgcttcttaacgat
aagcaagtttatgttggaccctttgttcacaagctgcagagagatccttcgggtgagaaa
gttaagttcactaatgtttatgtcaaaaatctctccgagtccttgagtgatgaagagctt
aacaaagtttttggagagttcggagtgactactagttgtgttatcatgagagatggtgaa
ggaaagtctaaaggctttggatttgtcaattttgagaattctgatgatgcagccagagct
gttgacgctctaaatggaaagacctttgacgacaaggagtggtttgttgggaaggcccaa
aagaagtccgagagggaaactgaactcaaacaaaagtttgagcaaagtttgaaggaggct
gcagacaagtctcaggggtcgaacttatatgttaagaacttggatgagagcgtcacagat
gataagctcagagaacattttgctccctttggaactattacatcatgcaaggtgatgcgt
gaccccagtggagtgagtagaggatctggatttgtcgcattttcaactcctgaggaagca
actagagctattacagagatgaatggaaaaatgatcgttaccaaacctctatatgttgct
cttgcgcagcggaaagaagaccgcaaagctaggttacaggctcaattttcacagatgagg
ccggtcaatatgccacctgcggttggtcctaggatgcaaatgtatccaccaggtggtcca
ccaatgggtcagcaactcttctatggtcaagggcctcctgctatgattcctcagcctgga
ttcggatatcaacaacagcttgtaccgggtatgagacctggtgggtctccaatgccaaac
ttcttcatgcctatgatgcaacaaggccagcaacagcaacagcagcaacagcagcagcag
cgacctggtggtggtagaagaggagctcttccacaaccacaacaaccttctcctatgatg
cagcagcagatgcatccaagaggtcgaatgtatcggtatcctcagcgagatgtaaacaca
atgcctggtcctactcaaaacatgctttctgttccatatgacgtctcaagtggtggtggt
gtgcatcatcgtgactcgcctacttctcaacctgttcctattgtagctttggctacacgg
cttgcgaatgcagctccagagcaacagagaacgatgcttggtgagaatctatacccgctt
gtggagcagctggagccagaatccgcagctaaagtcacgggaatgcttcttgaaatggac
caaaccgaagtacttcacttgctggaatcaccagaggcacttaaagctaaagttacagaa
gcaatggatgttctgaggagtgtagcacagcagcaagcgggtggtgcagctgatcagtta
gcttctctgtctcttggagacaacatcgtaccttga
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integrated database retrieval system
