Arabidopsis thaliana (thale cress): AT1G54440
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Entry
AT1G54440 CDS
T00041
Name
(RefSeq) Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G54440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G54440
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
AT1G54440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
841886
NCBI-ProteinID:
NP_175846
TAIR:
AT1G54440
UniProt:
Q0WVE8
A0A178W683
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Position
1:20322964..20328238
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AA seq
637 aa
AA seq
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MRFDDPMDEFKRNRKMEEDSKKVIDVKVAESDKGFAKFGKAEVPFHIPTLTKPQEEYKIL
VDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPVKPLPLEETPFKLVEE
VKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKLWDHIGPYL
RELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERNSLEFLLKHYCG
VAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKEDEQSDSPLVEV
YKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSIVAGLCEWRDRIARADDESTG
YVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLERNFDAVISVIRRSMQNAAAFEPVVQS
LKDRRPETVVEMNIEPKIEKTDTGASASSLSLEKVCVDDSKKQSSGFGVLPLKRKLESDK
TVVEKNIEPKIEKTGTEASASSLSSKKVCVDDSKKQSSGFGVLLSKRKFESDNKVKEEVK
VSKSKPDKVIIVVDDDDDDDDDESYEQSTKAADALDRVSETPSKGSPSLTQKPKTCNTEV
IVLDDDDDSESREDEDMRRRSEKHRRFMNMKRGFLNI
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgatgatcccatggatgagttcaagaggaatcgaaagatggaggaagattcg
aagaaggtaatcgatgtgaaagtggctgagagtgataagggattcgcgaaatttggcaag
gcagaggttccgtttcatataccgacgttaacgaagcctcaagaggagtataagattttg
gtagacaatgctaataatccttttgagcatgttttgttggagaagagtgaagacggtctt
cggttcattcatccactggaggaactatctgtgatggactttgttgatagaaatctaagt
gagatgagacctgttaagcctctcccattggaagagactccattcaagctagttgaagaa
gtcaaagatcttgaggacttagctgctgcattgcaaagtgttgaagagtttgctgtcgat
ctggagcataatcagtatagaacttttcaaggattaacatgcttgatgcaaatctctact
agaaccgaggattatattgttgatatattcaagctttgggatcacattggtccttatcta
agggaactcttcaaagaccctaaaaagaaaaaggtaatccatggagcagatcgagatatt
atttggcttcaacgggactttggcatttatgtctgcaatctttttgacacaggacaggct
tcaagggtgctaaagctggagagaaatagtctggaatttcttctgaagcattattgtgga
gttgctgcaaacaaagaataccaaaaagcagactggagaataagaccccttccagatgta
atgaaaagatatgctagagaagatacacattatcttttgtacatttatgatgtaatgcga
atggagttgcacacaatggcaaaggaagatgagcaatctgactctcctctggtagaggtg
tacaagcgcagttatgacgtgtgcatgcaactatatgaaaaagagctttggactagggat
tcatatcttcacgtttatggggttcagacaggtaatctcaatgcggttcaactttccatt
gttgcggggctttgtgaatggcgggatcggattgcacgcgcagatgatgagagcaccggt
tatgtattgccaaataaaactctttttgacatagccaaggagatgccaattgttgttgcc
cagttgcgccgtttgttgaagtcaaagcttccttacctcgagcgtaattttgacgcagtg
atcagtgtcatcagacgatcaatgcaaaatgcagcggcattcgagccagttgttcaatct
ttgaaagataggcgtcctgaaacagtggttgaaatgaatatagaacctaagattgagaaa
acagacacaggagcttcagcgtcttctctgagtctggagaaggtttgtgtggatgattca
aagaaacaaagcagtggttttggagttttgccgttaaagaggaagttggaaagtgacaaa
acggtggttgaaaagaatatcgaacctaagattgagaaaacaggcacagaagcttcagct
tcttctctgagttcgaagaaggtttgtgtggatgattcaaagaaacaaagcagtggtttt
ggagttttgctgtcaaagaggaagtttgaaagtgataacaaggtaaaagaagaggtcaaa
gtgtccaagtccaagccagataaggtaatcatagtggtggatgatgatgatgatgatgat
gatgatgagtcttatgaacagagcacgaaagccgctgatgctttggacagagtttcggaa
acgccttcgaagggatcaccatcgttgactcaaaagccgaagacatgtaatacagaggtt
attgtgttagacgatgatgatgactcggaaagcagagaagatgaagacatgcgtaggaga
agtgagaaacataggagattcatgaatatgaaacgtggctttcttaacatttag
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