Arabidopsis thaliana (thale cress): AT1G55150
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Entry
AT1G55150 CDS
T00041
Symbol
RH20
Name
(RefSeq) DEA(D/H)-box RNA helicase family protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT1G55150 (RH20)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT1G55150 (RH20)
03009 Ribosome biogenesis [BR:
ath03009
]
AT1G55150 (RH20)
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT1G55150 (RH20)
Spliceosome [BR:
ath03041
]
Complex A
U1 snRNP components
U1 related factors
AT1G55150 (RH20)
Complex B
AT1G55150 (RH20)
Ribosome biogenesis [BR:
ath03009
]
Eukaryotic type
Pre-60S particles
Helicases
AT1G55150 (RH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
841958
NCBI-ProteinID:
NP_175911
TAIR:
AT1G55150
UniProt:
Q9C718
A0A178W6R5
LinkDB
All DBs
Position
1:20574474..20577351
Genome browser
AA seq
501 aa
AA seq
DB search
MSRYDSRTGDSTSYRDRRSDSGFGGTSSYGSSGSHTSSKKDNDGNESPRKLDLDGLTPFE
KNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFT
EPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAP
TRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESN
NTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLY
NPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRS
TAPPPPGLGGFRDRGSRRGWS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgatagccggaccggcgattccacctcgtaccgtgaccgtcgaagtgac
tcagggtttggtgggacttcatcatatggaagctcaggtagtcatacatctagcaaaaag
gataacgatggcaatgaatctccaaggaagctagatttagatggtttgactccttttgag
aagaatttttatgtcgagtctcccgctgtggcggctatgacagacacagaagtagaggaa
tatcgaaagctaagggaaattactgttgaaggcaaagatattccaaaacctgtcaagagt
tttcgtgatgttggctttcctgattatgttttggaagaggttaagaaggctggttttact
gaacctacgcctatacaatctcaggggtggccaatggctatgaagggacgtgatcttatc
ggcattgctgaaactggttctggaaagactctttcttacttactacctgctattgtccat
gttaatgcccaaccaatgttagctcatggtgacggcccaatcgtcttggttcttgctccc
actcgtgaactggctgtgcagatacagcaagaggcatctaaatttggttcatcctcaaaa
attaagaccacttgcatttatggtggggttccaaaagggcctcaagtgcgtgatctccag
aaaggtgtggagatcgttatagctactcctgggaggttaatagacatgatggagtcgaac
aacacaaacctacgaagggttacttatcttgttttggatgaggctgatcgaatgcttgat
atggggtttgaccctcagatccggaaaattgtttcacatattcggccagaccgtcaaact
ttgtactggagtgccacttggcctaaggaggtggaacaactatcgaagaagtttctttat
aacccatacaaagtgataataggatcttctgatttgaaagctaaccgtgcaattcgtcaa
attgttgatgtcatttccgaaagccaaaagtataacaagttggtgaaactgcttgaggac
ataatggatggaagcagaattcttgtcttcctcgatacaaaaaagggctgtgaccaaatc
actcgtcagcttcgcatggatggttggcctgctttgtcaatacatggagataaaagtcaa
gcggaaagagattgggttctctcggagtttagatcaggcaaaagccctataatgactgct
acagacgttgcagctcgtggattagacgtgaaagatgtgaagtatgtgataaactatgac
ttccctggatcactggaggattatgttcacaggattggacgaacaggtagagccggggct
aaaggaacagcttacactttcttcacagttgcaaatgcgagattcgccaaggaacttacc
aacatactacaagaagctggacagaaagtgagtcccgaattggcttcaatgggtcgcagt
accgctcctcctcctccagggcttggaggattcagagaccgtgggagcagaagagggtgg
agctga
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