KEGG   Arabidopsis thaliana (thale cress): AT1G55530
Entry
AT1G55530         CDS       T00041                                 
Name
(RefSeq) RING/U-box superfamily protein
  KO
K11982  E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ath04131]
    AT1G55530
   04121 Ubiquitin system [BR:ath04121]
    AT1G55530
Enzymes [BR:ath01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     AT1G55530
Membrane trafficking [BR:ath04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab associated proteins
    AT1G55530
Ubiquitin system [BR:ath04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    AT1G55530
SSDB
Motif
Pfam: zf-RING_2 Zn_ribbon_19 zf-C3HC4_2 zf-RING_11 zf-C3HC4 zf-rbx1 zf-C3HC4_3 zf-RING_UBOX zf-ANAPC11 zf-RING_5 Ribosomal_60s CENP-B_dimeris zf-RING_6 NOA36 RING_XB3-XBAT31 Prok-RING_4 zf-HC5HC2H Coilin_N
Other DBs
NCBI-GeneID: 842000
NCBI-ProteinID: NP_001321432
TAIR: AT1G55530
UniProt: Q9ZVU8
LinkDB
Position
1:complement(20729125..20731356)
AA seq 351 aa
MEEAVVTRYWCHMCSQTVNPVMEAEIKCPFCQSGFVEEMEDDDDHDSSDPADVRANNSLW
APILMELMNDPVRRRRNQSVESVEDNQNEVQTENNEDDGENDLDWQLQEILRRRRRHSAA
VLQLLQGIRAGLSVESESTGNGGNNPGRVILINTSNQTITVQNSADMDSVPAGSLGDYFI
GPGFEMLLQRLAENDPNRYGTPPAKKEAVEALATVKIEETLQCSVCLDDFEIGTEAKLMP
CTHKFHSDCLLPWLELHSSCPVCRYQLPADEAKTDSVTTTSDNNGSSSASATTSHGAENS
DGNRRQEEEEEEEEEEEEENENNDGSGFSIPWPFSTLFSSSQDSNAPTDSS
NT seq 1056 nt   +upstreamnt  +downstreamnt
atggaagaagcagttgtaacgaggtattggtgtcatatgtgttctcaaactgtgaatcca
gtcatggaagctgagatcaaatgtcccttttgtcaaagtgggtttgttgaagaaatggaa
gatgacgacgatcatgattcttctgatccggctgatgttagagcaaacaactctctttgg
gcgcctatcttgatggaacttatgaatgatcctgtgcgtcgtaggagaaaccagagtgtt
gagtctgttgaagataatcaaaacgaggtacagaccgagaacaatgaagacgatggagaa
aatgatttggattggcagcttcaagagattctcaggagaaggagaagacattccgctgct
gttttgcagttgcttcaggggatacgagcagggttgtctgtagaatctgagagtactggt
aatggaggtaataatccgggacgggtgatcttgatcaatacctccaatcagactatcacg
gttcaaaactctgctgatatggattctgtacctgctggttctttaggtgactatttcatt
ggtcctggatttgaaatgttgcttcaacgtctagctgagaatgatcccaacagatatgga
acacctcctgctaaaaaagaagctgtcgaggctttggctactgtgaaaatcgaagagact
ctgcaatgttcggtttgtttagatgattttgagattggaactgaggcaaagctgatgccc
tgtacgcacaagtttcatagtgactgcttgttaccatggcttgagcttcacagttcatgc
ccggtttgcagatatcagttacctgcagatgaagccaagactgattcagtaacaacaacg
agcgataacaatggaagcagtagtgcttctgctacaaccagccatggagctgagaacagc
gatggaaaccggcgccaagaagaagaagaagaagaagaagaggaggaggaggaggagaac
gagaacaatgacggaagcggattctcgatcccgtggccgtttagcaccttgttctcctcg
tcgcaagatagcaatgcaccaacggattctagttaa

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