Arabidopsis thaliana (thale cress): AT1G55750
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Entry
AT1G55750 CDS
T00041
Name
(RefSeq) BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03022
Basal transcription factors
ath03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AT1G55750
09124 Replication and repair
03420 Nucleotide excision repair
AT1G55750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ath03021
]
AT1G55750
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT1G55750
Transcription machinery [BR:
ath03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AT1G55750
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AT1G55750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
842024
NCBI-ProteinID:
NP_001319242
TAIR:
AT1G55750
UniProt:
Q3ECP0
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All DBs
Position
1:complement(20840091..20845899)
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AA seq
591 aa
AA seq
DB search
MAGGQIEKLVKYKSTVKDPGTPGFLRIREGMLLFVPNDPKSDSKLKVLTQNIKSQKYTKE
GSNKPPWLNLTNKQAKSHIFEFENYPDMHACRDFITKALAKCELEPNKSVVSTSSEQLSI
KELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMM
VSGIKPSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEY
LYSTKNTAVAAAEAAEDEELAVFLKPDEILARETRHKIRRVDPTLDMEADQGDDYTHLMD
HGIQRDGTMDVVEPQNDQFKRSLLQDLNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQV
SKADGETTKDANQERLERMSRVAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVLNVPR
GAKGLKRNVHEAYGLLKESILEIRATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKNP
RESFLDRLPKSTKDEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLE
AMKESVQSDLRHQVSLLVRPMQQALDAAFHHYEVDLQRRTAKSGERPNGYV
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgggcaaatagagaagctagtcaaatacaagagcactgtcaaggatccagga
actcctggatttctcagaattagagaagggatgttgctcttcgtccctaatgatcccaaa
tcagattctaagctcaaagtacttactcagaacatcaaaagtcaaaaatataccaaagaa
ggatcaaataaacctccttggctcaatctcaccaacaagcaggcaaagagtcatatcttt
gagtttgaaaattatcccgacatgcatgcttgccgtgatttcatcactaaggcccttgct
aaatgtgaattggagcctaataaatccgttgtctcgacatcttccgagcaactcagtatt
aaggaattggagctgcgcttcaagcttctgagagaaaatagtgagctgcagagattgcat
aagcaatttgtggaaagtaaagtactgactgaagatgaattctgggctacaagaaagaaa
ttacttggtaaagattccatcagaaagtcaaaacagcagctcgggcttaagagcatgatg
gtttctggcatcaaaccatctactgatgggcggactaatagagtgacgtttaacttgaca
cctgagataatttttcagatttttgctgagaagccagctgttcggcaggcattcatcaat
tatgttccgagtaagatgacagaaaaagacttctggacaaaatattttagagcagaatat
ctttacagcaccaaaaatacagcagtagctgcagcagaagctgctgaggacgaggaactc
gctgtctttctgaagcctgatgagatattggctcgggaaactcgtcacaagattagacgg
gttgatccaactcttgacatggaggctgaccagggagacgactacactcatcttatggac
cacgggatccagcgtgatggcaccatggatgttgttgaaccacaaaatgatcagtttaaa
cgatcacttttgcaagatcttaatcgtcatgctgctgttgtattggaaggcagaagcatt
gatgttgagtcagaagatacaaggattgttgcagaggctctcacacgggttaaacaagta
agcaaagctgatggtgaaaccaccaaggacgctaatcaggagagattggaaagaatgtcc
cgggtagcaggaatggaggatcttcaagcaccacaaaatttcccattggcgccgctttct
atcaaggatcctcgtgattactttgaatctcaacaaggaaacgtcctcaatgtacccaga
ggagcaaagggcttgaagagaaatgtccatgaagcttatggattactaaaggaatccatt
ttagagattagagctacaggattaagtgatccgttgattaagcctgaagtttctttcgag
gttttcagttcgttaacccgaaccattgcaactgctaaaaatattaatgggaagaaccca
cgagagagctttctggacagattaccaaagtccactaaggatgaagttctacaccattgg
acatcaatacaagaattactgaaacatttttggtcatcttatccgataacaaccacatat
cttcataccaaggttggtaaactgaaggatgcaatgtccaatacatattcaaaacttgag
gcaatgaaagagtcggtgcaatctgatctccggcatcaggtttctctactggttcgtcca
atgcaacaggctcttgacgctgcgttccatcactacgaagtggatctgcagagaagaaca
gctaagagcggcgaaagaccaaacggctacgtatag
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integrated database retrieval system
