Arabidopsis thaliana (thale cress): AT1G55870
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Entry
AT1G55870 CDS
T00041
Symbol
AHG2
Name
(RefSeq) Polynucleotidyl transferase, ribonuclease H-like superfamily protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G55870 (AHG2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G55870 (AHG2)
Enzymes [BR:
ath01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
AT1G55870 (AHG2)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
AT1G55870 (AHG2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
842037
NCBI-ProteinID:
NP_175983
TAIR:
AT1G55870
UniProt:
Q9LG26
LinkDB
All DBs
Position
1:20895582..20898868
Genome browser
AA seq
689 aa
AA seq
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MRRHKRWPLRSLVCSFSSSAAETVTTSTAASATAAFPLKHVTRSNFETTLNDLRSLVKAA
DFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSFV
SYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHEGISYLSRREEEEAS
KRLKMLHGEDGIDSSGETEELKLVRLADVLFAARMEKLLNEWRSGLLHGGNASSEFPRIS
NGSNQSMETVFHHMRPALSLKGFTSHQLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVY
TDSDSDKENLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYS
KFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIE
FSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQ
HSQLDDFAQNEKLEKYINRLYLSWTRGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPR
KLKARGIKECICKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSV
LHPLSKILEGGNTGAADYEAYKEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREE
NTVTVTHKASDLIDAFLANRVEVETATSN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcgccggcacaagcgatggcctttgaggtctcttgtctgcagcttcagctcctctgcg
gcggagacagttactacttcaacggcagcttcagcgacggcggcttttccgttgaagcat
gtgacaaggtcgaacttcgagacgacgctgaatgatctacgctcactcgtaaaggctgca
gatttcgtggcgattgaccttgagatgactggcgtgacaagcgctccgtggcgagactcc
ttagagttcgaccgctacgacgtcagatacctcaaagtcaaagactccgccgagaaattc
gccgtcgttcagtttggtgtctgtccctttcgttgggattctcgtactcagtcattcgtg
tcctacccgcacaatttctttgtatttcctcgtcaagaactcacatttgatccaccagct
catgaatttctctgtcagactacatcaatggattttcttgccaagtatcagtttgatttc
aacacctgcatacatgaaggaatatcttatttgtccagacgagaagaggaagaggcaagt
aagcgtttgaaaatgctacacggcgaggacggaattgattcatcgggtgaaactgaagag
ttaaagttggtgcgattggcagatgttcttttcgctgcaaggatggagaaattgctgaat
gaatggcggtctggcctgttacatggtgggaatgcgtcctctgagtttccgaggatttca
aatggttcaaaccagagtatggaaactgtgtttcaccatatgcgtcctgctctcagtctg
aagggtttcacttctcatcagctcagagttcttaactcggttttaagaaagcattttgga
gatcttgtgtacatacattcaaatgataaaagttcttcttcacgagacattgttgtgtat
actgattcagattccgacaaggaaaacctcatgaaggaggcaaaggacgaacgcaagaga
ttggcagaaagaaaaatacaatctgcaatcgggttccgtcaagtgattgatctgcttgct
tcagagaaaaagctgatcgttggtcacaattgtttcctcgatattgcacatgtatacagc
aaatttgtgggtcctcttccttcaacagctgagaaattcgtggcctccattaacagtcac
tttccttatattgttgacaccaaaatactcttaaacgtgaatccaatgttgcatcagcgg
atgaaaaagtccagtacatcactgtcttccgcgttttcctcgttatgtccgcaaatcgag
ttttcttcaagaagctctgactcgtttcttcagcagcgtgtcaatattgacgttgaaata
gacaacgttaggtgttctaactggaatgcaggaggaaaacacgaagccggttatgatgct
ttcatgacaggttgcatctttgcgcaggcatgcaatcatctcggttttgacttcaaacag
cattcgcagttagatgactttgcccagaacgagaaacttgaaaagtacatcaaccgtctt
tatctcagctggacaagaggtgatatcatcgaccttcgaacaggccatagtaatgcagat
aactggcgagtctcaaagttcaaatacgagaacattgtcctcatctggaacttcccacga
aaacttaaggcgagagggatcaaagaatgcatatgcaaagcctttggctctgcttctgtc
acctctgtctaccacgtggacgactctgcggtttttgtcctgtttaagaactcagaactt
gtctgggacttcttagcactcaagcggcagctggagtcaagcgacggtccagtctcagtt
cttcaccctttatccaagatccttgaaggaggaaacactggagctgcagactacgaagca
tacaaagagatttgcagctcacacgtctcagaggtcatgttctctgaccaagctgaaaca
gttggtgtcaaatcaagaacaagacccaacgcacaatgcgagactgagacaagagaggag
aacacagtcactgtgactcacaaagcatcggatttgattgatgcgtttttggccaataga
gttgaagtcgaaactgctacgagtaattaa
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