Arabidopsis thaliana (thale cress): AT1G59760
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Entry
AT1G59760 CDS
T00041
Symbol
MTR4
Name
(RefSeq) RNA helicase, ATP-dependent, SK12/DOB1 protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G59760 (MTR4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G59760 (MTR4)
03041 Spliceosome [BR:
ath03041
]
AT1G59760 (MTR4)
03009 Ribosome biogenesis [BR:
ath03009
]
AT1G59760 (MTR4)
03016 Transfer RNA biogenesis [BR:
ath03016
]
AT1G59760 (MTR4)
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AT1G59760 (MTR4)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
AT1G59760 (MTR4)
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AT1G59760 (MTR4)
Complex C
U4/U6.U5 tri-SnRNP related factors
AT1G59760 (MTR4)
Ribosome biogenesis [BR:
ath03009
]
Eukaryotic type
Pre-60S particles
Helicases
AT1G59760 (MTR4)
Transfer RNA biogenesis [BR:
ath03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
AT1G59760 (MTR4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
842269
NCBI-ProteinID:
NP_176185
TAIR:
AT1G59760
UniProt:
Q9XIF2
A0A654EKU7
LinkDB
All DBs
Position
1:complement(21984428..21990286)
Genome browser
AA seq
988 aa
AA seq
DB search
MGSVKRKSVEESSDSAPPQKVQREDDSTQIINEELVGCVHDVSFPENYVPLAPSVHNKPP
AKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK
ALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWIIFD
EVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYR
PTPLQHYVFPAGGNGLYLVVDEKSKFHEDSFQKSLNALVPTNESDKKRDNGKFQKGLVIG
KLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIFAS
AIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFS
IGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPA
VAKSMLKGSADSLNSAFHLSYNMLLNQLRCEEGDPENLLRNSFFQFQADRAIPDLEKQIK
SLEEERDSLVIEEEESLKNYYNLILQYKSLKKDIREIVFTPKYCLPFLLPNRAVCLDCTN
DDEEPQSFSIEDQDTWGVIMKFNKVKSLSEDDDSRRPEDANYTVDVLTRCMVSKDGVGKK
KVKAVPIKERGEPVVVTVPLSQIKSLSSAIMNIPKDLVPLEARENALKKVSELLSRHPDG
IPLDPEVDMKIKSSSYKKTVRRLEALENLFEKHKIAKSPLITEKLKVLQMKEELIAKIKS
LKKTVRSSTALAFKDELKARKRVLRRLGYITSDNVVELKGKVACEISSAEELTLTELMFS
GIFKDAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKVEID
VESFVQSFRPDIMEAVYAWAKGSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSI
GETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgggttccgtgaagagaaaatcagtggaggaatcttctgattctgctccgccgcaaaag
gttcagagagaagacgattccacccaaatcatcaacgaagagctagttggttgcgttcac
gatgtttccttccctgaaaattacgttcctcttgctccctccgttcacaataaaccacca
gctaaagatttcccctttacacttgactccttccaatctgaagctatcaagtgtctcgat
aatggcgagtcagtcatggtttcagctcatacatcagctggtaaaactgttgtggcgtcg
tatgctattgccatgtctttgaaggaaaaccagagagttatttacacttctcctataaag
gcacttagtaatcagaagtacagagattttaaagaagagttttctgatgttggtttgatg
actggggatgtgactatcgatcctaatgcctcttgtcttgtcatgactacggagattttg
cgtagtatgcagtataaagggtcagagattatgcgggaggttgcgtggattatttttgat
gaggtgcattacatgcgtgatagcgaaagaggtgtggtttgggaagagagtattgtaatg
gctccgaagaattctcgttttgtgtttctatcggcaacagttcccaatgccaaggagttt
gctgattgggttgcaaaggttcaccaacaaccatgtcacattgtttacaccgattatcgg
ccaactccacttcagcactatgtctttcctgctggaggtaatggactttacttggttgtg
gacgaaaaatctaaatttcatgaggatagcttccagaaatctctcaacgcactggttccg
actaatgagagtgacaagaaaagagataatggaaagtttcaaaagggattagtgattgga
aaacttggtgaagaaagtgatattttcaaattggtgaaaatgataattcagcggcaatat
gatcccgtgattttgttcagtttcagcaaaaaggaatgcgaggcacttgctatgcagatg
tctaagatggttttgaacagcgatgatgagaaagacgctgtggagacaatctttgctagt
gcaattgatatgctttcagatgatgataaaaagctacctcaggtgtcaaatattttaccc
atcttgaaacgtggtataggcgttcatcattcaggactgcttccaattttgaaagaagta
attgagatattatttcaggaaggtcttattaagtgtttgtttgcaacagagacatttagt
attggattgaacatgccggcaaagacggttgtatttaccaatgtacgtaagtttgatgga
gacaagttccggtggctatcaagtggagagtacatacagatgagtggtcgtgccggacgt
cgaggtattgacaaacgaggtatctgcatcctcatggttgacgagaagatggaacccgct
gttgctaaatcaatgctcaaaggaagtgctgattctttgaacagtgccttccatttgagc
tataacatgcttctaaatcaattgcggtgtgaagaaggtgatcctgagaatcttctgcga
aattcgttctttcagtttcaagctgatcgtgctatacctgatctcgagaagcaaataaaa
tctctggaagaagagagagactctttggtgattgaagaagaagaaagcttaaaaaattac
tataacctgattttgcaatataagagtctgaagaaggatatacgtgaaattgtgttcact
ccaaagtactgcttaccctttttgctgccaaacagagctgtttgtctcgattgcacaaat
gatgatgaagagccacaatcattcagcattgaagaccaggatacatggggagtgatcatg
aaatttaacaaagtcaaaagtttatctgaagatgatgatagtagaagaccagaggatgca
aactacaccgtagatgtgttgactagatgtatggttagcaaagatggcgttggcaaaaag
aaagttaaggctgtgccaattaaggaacgtggtgagcctgttgtggtcactgttccttta
tcgcagataaagagtttaagcagtgcaatcatgaatataccaaaagatcttgtacctttg
gaagctcgagagaatgctctgaagaaggtttctgagttactctctagacatcccgatgga
atacccctagatcctgaagttgatatgaagattaagagcagctcttacaaaaagacagtt
cggcggctggaggctctggaaaacctatttgaaaaacacaaaattgcaaaatctccactc
ataacagaaaagttgaaagttctacagatgaaggaagagctaatagccaagatcaagtca
cttaagaaaactgtccgatcgtcaacagcattggcgtttaaagatgaactcaaggccaga
aagcgtgttttacgaaggctaggatacatcactagtgataatgtcgtggagttgaagggt
aaggttgcatgtgaaatcagtagtgcagaagaattgacattaacggagttaatgttcagt
ggtatcttcaaggatgcaaaggtggaggagttggtttcgctcctctcttgctttgtatgg
cgagagagactccccgacgctgctaaacccagagaagaactcgacttgctcttcatacag
ttacaagacacagccaggcgtgtagctgaagttcagcttgactgcaaggtcgaaatagac
gtggagagttttgtgcagtctttcagacctgatataatggaggcggtgtatgcttgggca
aaagggtccaaattctatgaggtcatggagattgctcgtgttttcgaagggagcttgatc
agagcgataaggagaatggaggaagttctgcaacagctcatagtagctgcaaaatctata
ggagaaacacagcttgaagctaaactagaagaagctgtttccaagatcaaaagagacatt
gtattcgcggcgtctctctacttgtga
DBGET
integrated database retrieval system
