KEGG   Arabidopsis thaliana (thale cress): AT1G60080
Entry
AT1G60080         CDS       T00041                                 
Name
(RefSeq) 3'-5'-exoribonuclease family protein
  KO
K12586  exosome complex component RRP43
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT1G60080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT1G60080
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     AT1G60080
SSDB
Motif
Pfam: RNase_PH RNase_PH_C GlnR_1st
Other DBs
NCBI-GeneID: 842303
NCBI-ProteinID: NP_176216
TAIR: AT1G60080
UniProt: A0A178WDS9 Q9ZUI4
LinkDB
Position
1:complement(22152230..22154643)
AA seq 302 aa
MGIPDAAQDLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTAD
GSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVIS
KRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIP
IVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPT
TEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQILGEMD
ID
NT seq 909 nt   +upstreamnt  +downstreamnt
atgggaataccagatgcagctcaagacttgtcgacagagatggaagttgatgcttttaga
agaatcttccctcttcgtttctttgagcgtcatctctctgaatctcttcgtcctgatgga
agacaacttggaaaagctagagacaccattgttaatcttggacttgtttcaactgctgat
gggtctgctcttgctaagattggttccactactatgcttgctgctattagaatggaagtt
atgactccttctacggactctccagacgaaggatgcatagctattgagttccatatgcct
ccaatttgttctccgactgttcgtcctggaagaccagccgaagctgctcccgttatttca
aagcgtttgtctgatactattttaagttctggtatgattgatcttaaagaactgtgtcta
gttagtggaaaagctgcttggatgggttatctggacatatattgcctggatgctgatggt
gctctctttgatgctgctctgcttgctgctgtcgcagccttctccaatctgcaaattcca
attgttgctctgaatgacaatggaagaatagttgccgtcactggagaaaaagatcaagac
aatgctttgatcaccgagaaagaagcagtgaacaaggagaagagaaaacttacgcttaag
aacattcctttctctttaacttgcatacttcacaagaactacatcttagcagatccaaca
accgaagaagaatcgatcatggacactcttgtgactgttgttttggattcctcggatcaa
atggtttctttctacaaatcaggaggagctgctctcgcctattcatcagccatcaagagc
tgtgtcgagttagcaaggaagagagcaaaggagcttaagcagatattgggagagatggat
atcgactaa

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