Arabidopsis thaliana (thale cress): AT1G62020
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Entry
AT1G62020 CDS
T00041
Name
(RefSeq) Coatomer, alpha subunit
KO
K05236
coatomer subunit alpha
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT1G62020
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ath04147
]
AT1G62020
Membrane trafficking [BR:
ath04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
AT1G62020
Exosome [BR:
ath04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
AT1G62020
Exosomal proteins of bladder cancer cells
AT1G62020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
TPR_COPA_B
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Fis1_TPR_C
Beta-prop_IP5PC_F
ENTH
Beta-prop_At4g14310
Motif
Other DBs
NCBI-GeneID:
842497
NCBI-ProteinID:
NP_176393
TAIR:
AT1G62020
UniProt:
Q94A40
A0A178WAY4
LinkDB
All DBs
Position
1:22919487..22924024
Genome browser
AA seq
1216 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFH
NSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMR
LTQMNSDLFGGVDAIVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE
VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAVHP
EMNLLAAGHDSGMIVFKLERERPAFALSGDSLFYAKDRFLRYYEYSTQRDSQVIPIRRPG
TPSLNQSPRTLSYSPTENAVLICSDLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVF
IARNRFAVLEKSTSQVLVKNLKNEVVKKSPLPIPTDAIFYAGTGNLLCRSEDKVVIFDLQ
QRLVLGELQTPFVRYVVWSSDMESVALLSKHTIIIASKKLVLQCTLHETIRVKSGAWDDN
GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNKAITINATEYI
FKLSLLRKRYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVEDERIRFNLALESGNI
SVAVASATQINEKDHWYRLGVEALRQGNSGIVEFAYQQTKNFERLSFLYLITGNLDKLSK
LMKIAEVKNNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLNDIAERLATEL
GDNVPSLPEGKTPSLLMPPTPIMCGGDWPLLRVMKGIFEGGLESADRGGTVDEEDVEGDW
GEELDINVDGMENRDIEDILAAAEAGEEENDEEGGWGLEDLVLPPELDTPKASANARSSV
FVTPPQGMPVSQSWSQKSSLAAEQAAAGSFDTAMRLLHRQLGIKNFTPLKSMFLDLFNGS
HSYLRAFSSCPVVPLAIERGWSESSSPNVRSPPALVYDFSQLDEKLKSGYKATTTGKFTE
ALRLFLSILHTIPLVVVETRREVDEVKELIVIVKEYVLGLQMELKRREMKDDPVRQQELA
AYFTHCNLQTPHLRLALLSAMGVCYKAKNLATASNFARRLLETSPVDSQAKMARQVVQAA
ERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCDLAV
IGADASGLLCSPSQVR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgttgacaaagttcgaaaccaaaagtaacagagttaagggactgagttttcaccctaaa
cgaccatggattctcgcgagtttgcacagtggcgtgatccagctctgggattatcgtatg
ggtactttgatcgatagattcgacgaacacgaaggacctgttcgtggtgttcatttccac
aattctcagcctctcttcgtctccggaggggatgattacaagattaaagtgtggaactac
aaaaaccacaggtgccttttcactcttctagggcatcttgattatatccgcacggttcag
ttccatcatgagtacccatggattgtgagtgcaagtgatgatcaaactatccgtatatgg
aactggcaatcacggacttgtgtttctgtattgactggtcacaatcattatgttatgtgt
gcttctttccatccgaaagaagacctcgtcgtatcagcttcgttagatcagactgttcgt
gtttgggatattggtgctcttaggaagaagactgtatctcctgctgatgatatcatgagg
ttgactcagatgaatagtgatctttttggtggagttgatgccattgtcaagtacgttctt
gaaggtcatgatagaggtgtaaactgggctgcttttcatcccaccctgcctcttattgtc
tcgggtgcagatgaccgccaagtaaagctgtggcgtatgaatgaaactaaagcttgggag
gtggatacattgcgaggccatatgaataacgtttcatctgttatgttccatgcaaaacag
gacataattgtatcaaactctgaagataagagcatccgtgtctgggatgctaccaagcga
actggacttcagactttccgtcgtgaacatgatagattctggattcttgcagttcaccct
gagatgaatctactagcagcaggacatgacagtggcatgattgtgttcaagcttgagaga
gaacgtcctgcatttgctttgagtggggattctttgttctatgccaaggatagattcttg
cggtactatgaatattcaactcaaagggattcccaagttatccctatacggcgtccgggt
actccaagcttgaatcaaagtcctaggactctatcatacagtcccactgaaaatgcagtt
ttgatctgctcagatctggatggtggttcgtatgagttgtacatcataccgaaagatagt
gttggcaggagtgacgttgtgcaagatgcaaagagagggacaggtggctctgcagtattc
attgcccgtaaccgatttgctgttctcgagaaaagcaccagccaagtgctagtcaagaat
ctaaagaatgaggtggttaaaaagagtcctctgcctattcccacagatgctatcttttat
gctgggactgggaatttgctttgtagatctgaggataaagtagttatctttgacctccag
caaaggcttgttcttggtgagcttcagacaccatttgttaggtacgttgtttggtccagt
gatatggagagtgttgctttgctcagcaaacatactatcattatcgcgagcaaaaaactt
gttctccagtgcacgcttcatgagacgatacgtgtgaaaagtggagcttgggacgataat
ggtgtcttcatttacacaactttgaatcatatcaagtactgtcttcctaatggagatagt
ggaatcatccgaaccctggatgtcccaatctatatcaccaaggtgtctggtaatacaatc
ttttgcttggatcgggatggcaaaaacaaggctatcaccattaatgcaaccgagtacatt
ttcaagctttcactgctgaggaagagatatgatcatgtcatgagcatgataaagaactct
cagctatgtggacaggctatgattgcttacctgcagcagaaaggattccctgaagttgcc
ctccattttgttgaagatgagaggatccgattcaatctggctcttgaaagtggcaacatc
agtgtggctgttgcatccgctacacagattaacgagaaagaccactggtatagacttgga
gtggaggctcttcgccaaggtaattctggaattgttgagtttgcataccagcagacaaag
aactttgagaggttatcttttctttatctcattactggaaatttggacaagctttcaaag
ttgatgaagattgcagaagtgaagaacaacgtaatgggacagtttcacaatgctctctac
ctaggagatgttaaagagcgtgttaagatactggagaatgctggtcatttgcctctagct
tatatcacagcttcggttcatggtttaaatgacattgctgagcgactggcaactgagtta
ggagacaacgtgccctcattgcctgaaggaaaaactccatcgcttctaatgccaccgaca
cccatcatgtgtggtggtgattggcctcttcttagagtgatgaaaggaatatttgaagga
ggacttgagagtgcagacagaggaggtactgttgatgaagaagatgttgaaggggattgg
ggtgaggaacttgacattaatgttgatggaatggagaacagagatattgaagacattttg
gcggctgcagaagcaggtgaagaagaaaacgatgaggaaggtggatggggacttgaagac
ttggtgctcccaccagagcttgacactcctaaagcctctgctaatgcacgttcatctgtt
tttgtgacacctccccaaggtatgcccgtaagtcagagctggagccagaaatcttctctt
gctgctgagcaagccgcagcgggaagcttcgacactgcaatgcgtctgctccacagacag
cttggtatcaagaactttacacctttgaaatcgatgtttctagatctgttcaatggcagc
catagctatctgcgtgctttttcttcatgtcctgtggttccacttgccattgagcgtgga
tggagcgagtcttccagtcccaacgtccgtagcccaccagctcttgtttatgatttctct
cagctagacgagaagctcaaatccggctacaaagctacaacaactgggaaattcactgag
gctctccgtctcttcctttctatcctgcacaccatccctctagtggtagtcgagacaaga
agagaagtggatgaggtcaaggaattaatcgttatcgttaaagaatatgtccttggtctt
caaatggagctcaagaggagagagatgaaagatgatccggtgaggcagcaagagctcgct
gcttacttcactcactgcaacctccaaacacctcacttacggcttgcgctgcttagtgca
atgggtgtctgctacaaggcaaagaacctcgccactgcttctaatttcgccagaagactg
ttggaaacaagcccagttgatagccaagccaagatggctagacaagttgtgcaagccgct
gaacgtaacatgaccgatgaaacaaagcttaactacgacttcaggaacccttttgtggta
tgtggttccacatatgtcccgatctacagaggacagaaagacgtctcatgtccttactgc
accgcccggtttgtaccaaaccaggaaggaaacatctgcacggtctgtgatctagcagtg
attggcgcagacgcatctggtttgttatgctctccatctcaagtccggtga
DBGET
integrated database retrieval system
