Arabidopsis thaliana (thale cress): AT1G65570
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Entry
AT1G65570 CDS
T00041
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Module
ath_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT1G65570
Enzymes [BR:
ath01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
AT1G65570
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
DUF3737
Ntox24
Motif
Other DBs
NCBI-GeneID:
842868
NCBI-ProteinID:
NP_176735
TAIR:
AT1G65570
UniProt:
O04474
A0A654ELM9
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Position
1:complement(24373874..24375895)
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AA seq
397 aa
AA seq
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MALFLSFVQVFSIVITIIMSHFGQFDARTSLNVLSFGANPNGIVESAKAFSDAWDAACGV
EDSVVIYVPKGRYLVSGEVRFEGESCKSREITLRIDGTLIGPQDYSLLGKKENWFSFSGV
HNVTVLGGSFDAKGSTLWSCKANGYNCPEGATTLRFMDSNNVKIKGVLSLNSQLFHIAIN
RCRNIKIEDVRIIAPDESPNTDGIHIQLSTDIEVRNASIKTGDDCISIGPGTKNLMVDGI
TCGPGHGISIGSLAKSIEEQGVENVTVKNAVFVRTDNGLRIKSWPRHSNGFVERVRFLGA
IMVNVSYPILIDQNYCPGDSSCPSQESGIKINDVIYSGIMGTSATEIAIKMDCSEKVPCT
GIRMQAINLTSYGEAAKTSCTNVSGKQLGLVTPSGCL
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggcattgtttctaagctttgttcaggtctttagcatcgttataacaatcattatgtcc
cactttggtcagtttgacgcaagaacaagtcttaacgttctgagtttcggtgcaaaccca
aacgggatcgtagagtcggcaaaagccttttcggatgcatgggatgctgcgtgtggagtg
gaagactcagttgttatttacgtcccaaagggaaggtatttggttagtggggaggttagg
ttcgaaggagaaagttgcaaaagccgtgagataaccctaaggattgacggaactttaatt
ggtcctcaagactacagtttgcttgggaaaaaagaaaactggtttagttttagtggtgtt
cacaatgttacggttcttggaggttcttttgatgctaagggatcaaccttgtggagttgc
aaggctaatggttacaactgccctgaaggtgcaacgacattgagattcatggactcaaac
aacgtgaagatcaaaggagtattatcgttgaatagccaattgttccacatagcaataaac
cgttgcagaaacataaagattgaagatgtccgaatcatagcacccgatgagagtcctaac
actgatggcattcacattcagctatctaccgatatcgaagtccgaaatgcttccatcaaa
accggagacgattgtatctcaatcggaccaggtacaaagaaccttatggtcgatgggatc
acttgtggtcctggacatggaatcagcattgggagcttagcaaagtccatagaggagcaa
ggcgtggaaaacgtaactgtgaagaatgctgtgtttgtacggacggacaatgggcttagg
atcaagtcgtggccgcgacatagcaacgggttcgtggagagggtccggttcttaggagct
attatggttaatgtctcatatcctatcctcattgatcagaactattgccctggcgattct
tcttgcccttctcaggagtcaggaatcaaaataaacgatgtaatatatagtggaatcatg
ggaacatcggccacagagattgctataaaaatggattgcagtgagaaagtcccatgcact
gggattcgaatgcaggcaattaatctaacttcttacggtgaagcagcaaagacttcttgc
accaatgtttctggtaagcaacttggattggttacacctagtggatgtctatga
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