Arabidopsis thaliana (thale cress): AT1G65700
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Entry
AT1G65700 CDS
T00041
Symbol
LSM8
Name
(RefSeq) Small nuclear ribonucleoprotein family protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT1G65700 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G65700 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G65700 (LSM8)
03041 Spliceosome [BR:
ath03041
]
AT1G65700 (LSM8)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT1G65700 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
AT1G65700 (LSM8)
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
AT1G65700 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7130
Motif
Other DBs
NCBI-GeneID:
842881
NCBI-ProteinID:
NP_176747
TAIR:
AT1G65700
UniProt:
Q8VYI0
A0A178W8C1
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All DBs
Position
1:complement(24434203..24436456)
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AA seq
98 aa
AA seq
DB search
MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG
LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaactactggacttgagactctcgtcgatcagattatttcggtgattacaaat
gacggacgcaacattgtgggagttcttaaaggttttgaccaggctacaaatataatcctt
gatgaatctcatgaacgtgtgttttccacaaaggaaggagtacaacaacatgtgttgggt
ttgtacatcatcagaggggacaacataggtgttatcggggagctggacgaggagcttgat
gctagtctggatttttcgaagctgagagcccatccgttgaaacccgtagtgcattga
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