Arabidopsis thaliana (thale cress): AT1G76630
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Entry
AT1G76630 CDS
T00041
Name
(RefSeq) Tetratricopeptide repeat (TPR)-like superfamily protein
KO
K12600
superkiller protein 3
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G76630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G76630
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
AT1G76630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_8
TPR_11
TPR_14
TPR_16
TPR_CcmH_CycH
TPR_12
TPR_19
TPR_7
TPR_9
TPR_20
TPR_NPHP3
BTAD
Motif
Other DBs
NCBI-GeneID:
843996
NCBI-ProteinID:
NP_001185412
TAIR:
AT1G76630
UniProt:
F4I3Z5
A0A178WG03
LinkDB
All DBs
Position
1:28759478..28765042
Genome browser
AA seq
1168 aa
AA seq
DB search
MELEQLKKSVEENPDDSSLQFELGLYLWDNGGDSEKAAEHFVLSAKSDPNNAVAFKYLGH
YYSRVTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKA
FWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKAYGR
AIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSWSKEC
INLGAFGWAASLLEDARKAAKASSELASSMSCIWKLHGDIQLTYARCFPWSGGTENSEFT
LKTFSDSILSWRSICYSAALSAKASYQRALHLAPWQANVYTDIAITCDLVSSLSDDSDTS
SSWKLPEKMVLGALLLECENSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWAFMGQ
IFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISPLAE
FQVGLAWLALLQGNISSPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRL
ALAAMSIYPESSVKSHAGKVSINLVRSLSKAGRFKESVMECANLKSKGLLDAGGLQIYAF
SLWRTGQNDSALSVIRDLAGRISTREKTSIAFPISFICSLLYCISGLDSAITSIQKMPKD
FFQSSKISFIVSAIHSLDQSDRLQSIVASTRSYITSQEEIVAMHYLIALSKLLKTGAGDF
LGYEKGIAHLSKAIHMYPHSNLIRNLLGYILLAGEGMKDACTASRCCIINVSECANKEGL
KSALEVLGGGSVACNVIGNTAPRFSFPTCHCQYLNAPVVVVELQRFLHQEPSNSSVRYLL
ILNLVQKAREQRFPRQLCRAIERLISVALSDETCSKEGEYKKFQLLLCASEISLQMGNIA
ESINHARKASSLSLPSSYLFLGHLQLCRAYAANGSTKNMQEEYRACLELKTDSNIGWICL
KLIESQYNLEPDANLLEMSLQECSSQKKNSWKEWMAVYSLARGLDSTGKKDFFSAEEFLA
QACSLLNSESCLLLCHGAVCMELARQSNDSQFLSLAVKSLSKVQASSLFPLPIVYTLLAQ
AHGSLGSKEKWEKNLRLEWFCWPPEMRPAEVYFQMHILARQSEDRPETTSGIENYQSPEK
WVIRAIHTDPSCRRYWKVLDKLVQHPMS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggaattagagcagcttaagaagtctgtagaagagaacccagatgactcttctctacaa
ttcgaactcggtttgtatctgtgggataatggtggagattcagagaaagcggcggagcat
tttgtgttgtcggcgaaatcagatccgaataatgcagtggcgtttaagtatttagggcat
tactactcgcgtgtaacgcttgatcttaatcgagctgctaagtgttatcagagagcagtg
ttgataaaccctaatgattctgattctggagaagctttgtgcgatttatttgatagacaa
gggaaagagattttggaaattgcggtttgtcgtgacgcttctgagaagtctcctaaggct
ttctgggcattttgtagattgggttatattcagcttcatcagaagaagtggtctgaagct
gttcagagcctacagcatgcaattagaggttatcctaccatgtctgacttgtgggaagct
ctaggccttgcttaccagcgacttggaatgtttactgctgctatcaaggcgtatggccgc
gccatagaattagatgagaccaaaatttttgcattagtggaaagtgcaaatatctttttg
atgcttggctcatatagaaagggtgtggagctatttgagcaagcactgaagatttcacct
cagaatatttctgtgctctatggtcttgcttctggattgcttagttggtcaaaggaatgc
ataaatttgggcgcatttggatgggcagcttcgttattggaggatgcccgtaaagctgca
aaagcaagcagtgaactggccagcagcatgtcttgtatatggaaattgcatggagatatt
cagcttacatacgcaagatgctttccatggtctggtggaactgaaaactcagaattcact
ttgaagacatttagtgattcaattctttcttggagaagcatttgttactcagctgcattg
tcagccaaagcttcttaccagcgagctctacacttagccccttggcaagctaatgtttat
accgacatagccataacttgtgatcttgtttcaagtttaagcgatgactctgatacttca
agttcttggaagctaccagaaaagatggtgctgggagcattattgctggaatgtgaaaac
tcggagttctgggttgctttgggttgtatgtctgataacagtgctttgaaactacatgct
ttgatccgggcattgcatttggatgtatctttagccgttgcttgggcttttatgggccag
attttcagggaatcggatgaaatgaaatttgcaaagcaagcttttgattgtgctagaagc
atagatcctacacttgcgctaccttgggctggctcagctgatacttatgcgagggagtca
acatcagatgaggcttttgagagttgtttacgagctgcacagatatcacctcttgcagaa
ttccaagttggtttggcatggcttgctttgctgcagggaaatatatcatccccgcagatt
tttgcttgcattgagcaggcagtgcagcgcagcccttattaccctgaaccccataacctc
catgggctagtttgcgaggcaagacataattatcacactgccattgcttcttataggcta
gcactagctgcaatgagtatttatcccgaaagttcagtaaaatctcatgctggaaaagta
tctataaacttggtcaggtcactcagcaaggcaggacgattcaaagaatctgttatggaa
tgcgctaatttgaagtcaaaaggtttgcttgatgccggaggtttgcaaatatatgctttc
tctctgtggaggactggtcagaatgattcggctctttcagtgattagggatctggctggt
aggatttctaccagggaaaaaacctccatagccttcccaatcagcttcatctgtagtcta
ctttattgcatatctgggttagattctgctatcaccagcatccagaaaatgccaaaggat
ttcttccagagttcgaaaatcagctttatagtatctgccatccattctcttgatcagagt
gatagacttcagtcgattgttgcaagcactcgtagctatataacatcacaagaagaaata
gttgcaatgcactatttgatagcactcagcaaattgctgaaaactggagcaggagatttc
cttggatatgagaaggggattgcccacctcagcaaagctattcatatgtatcctcatagt
aatttgataaggaacctgcttggatatattttgttagctggtgaaggaatgaaagatgca
tgtactgctagtagatgttgtatcataaatgtctctgagtgtgcaaataaggaaggtctg
aagtccgcattggaggtccttggtggaggatcagttgcttgcaatgtaattggcaataca
gctcctaggttctcatttccgacatgccattgtcagtatctgaatgctcctgttgttgtt
gtagaattgcaaagattcttgcatcaagaaccttcgaacagcagtgtaagatacttgctt
attctgaatctcgtgcagaaggcacgtgagcagagatttcctcgccagctttgtagggct
attgagcgtctaatatctgtggcactctctgatgagacatgttcgaaagaaggcgaatat
aaaaaattccagcttctgctttgtgcttctgagattagtttacagatgggaaatatagca
gagtccattaaccatgctcgaaaggcttcttccctttctcttccaagtagctatctattt
ctaggacatttacaactttgccgtgcctatgcagcaaatgggagtaccaaaaacatgcaa
gaggaatacagagcgtgtttggaactcaagactgactcaaatattggttggatttgcctg
aagctcatagaatctcagtataatctggaacctgatgctaacctcttagagatgagccta
caagaatgctcgagccagaagaagaattcatggaaagaatggatggctgtatacagttta
gctcgtggcttagattctacagggaaaaaagactttttctcagcagaggaattccttgca
caagcttgttcgttgttaaattcagagagctgtctacttctctgccatggtgctgtctgc
atggagctggctagacagtctaatgactcgcagtttctctcactagctgtaaaaagtctt
agcaaagttcaagcgagttcattgtttcctttgcctatcgtttatacattattagctcaa
gcacatggaagtcttggctctaaagagaaatgggagaagaatcttcgtctggaatggttc
tgctggcctccagaaatgagacctgcagaagtttacttccagatgcatatactcgcaaga
caatcagaagacagacctgaaaccacttcagggattgaaaactaccaaagtcctgagaaa
tgggtgattagggctattcacactgatccttcttgtcggagatattggaaagtcttggat
aagcttgttcaacatcccatgagctga
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integrated database retrieval system
