Arabidopsis thaliana (thale cress): AT1G77000
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Entry
AT1G77000 CDS
T00041
Symbol
SKP2B
Name
(RefSeq) RNI-like superfamily protein
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
AT1G77000 (SKP2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ath04121
]
AT1G77000 (SKP2B)
Ubiquitin system [BR:
ath04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
AT1G77000 (SKP2B)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_At5g56370
LRR_4
LRR_NXF1-5
F-box
F-box-like
LRR_At1g61320_AtMIF1
LRR_8
Motif
Other DBs
NCBI-GeneID:
844036
NCBI-ProteinID:
NP_565147
TAIR:
AT1G77000
UniProt:
O49286
A0A178WNL6
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All DBs
Position
1:28940147..28942639
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AA seq
360 aa
AA seq
DB search
MVSEGATRKELNLCFENMKMEGVLISEWKDIPVELLMKILNLVDDRTVIIASCICSGWRD
AVSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQ
DLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCV
EAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESV
VALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEMWRAVKKGKFDEEGLRSLNIS
QCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACILQAHRTHTVYPHPAH
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtgaaggagcaacaagaaaagaacttaacctctgtttcgagaatatgaagatg
gaaggagttttgatctctgagtggaaagatatccctgtggagcttctcatgaagatttta
aaccttgttgatgatcggactgtgatcattgcttcttgtatttgtagtggctggagagat
gctgtttcccttggcctcactcgcctctccctctcttggtgcaagaagaatatgaacagt
ttggttctatctcttgctcccaaattcgtaaagcttcagactttagtactgcgacaggac
aaaccgcagcttgaggacaacgcggtggaagccatagcaaatcactgtcatgagctacaa
gatttggacttaagcaaaagctcgaaaatcactgaccattccctatattcacttgctcgt
ggttgtactaacctgactaaactcaaccttagcggctgcacttcgttcagcgacactgct
cttgcgcatttgacaagattttgcaggaagctcaaaattctgaatctttgtggttgtgtt
gaagctgtatctgacaatacattgcaggctattggagaaaactgcaatcagttgcagtca
ctaaacttgggatggtgtgagaatataagtgatgatggagttatgagtttagcttatggt
tgtcctgatttaagaactcttgatctttgtagctgtgttctaatcacagatgagagtgtt
gtggctttggcgaatcggtgcattcacttgaggtcattggggttatactactgcagaaac
attacagacagagcaatgtactctttagctcagagcggagtcaagaacaaacacgagatg
tggcgagcggtaaagaaaggaaaattcgatgaagaaggactaagaagccttaacattagt
caatgcacttacctaacaccttcagctgttcaagctgtctgtgatacattccctgctctc
cacacttgttcaggcagacattcacttgtcatgagcggttgtttgaatctacaatctgtt
cattgtgcttgtatccttcaagctcaccgcactcacaccgtttaccctcacccggcgcat
tga
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