Arabidopsis thaliana (thale cress): AT1G79090
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Entry
AT1G79090 CDS
T00041
Name
(RefSeq) topoisomerase II-associated protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G79090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G79090
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT1G79090
mRNA degradation factors
5'-3' decay
Decapping complex
AT1G79090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
844250
NCBI-ProteinID:
NP_001320315
TAIR:
AT1G79090
UniProt:
Q0WPK4
A0A654ERX0
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All DBs
Position
1:complement(29749101..29753330)
Genome browser
AA seq
793 aa
AA seq
DB search
MDAFGIGSSLNQAPVTQDLKKFGDNSTGNTMFDASQYAFFGNDVVEEVELGGLEEEDEIL
SFTGIAEDFSFDKEEVGDSRLLSDVDDLASTFSKLNREPDVYSNTGPITDRRSSQNSLAA
EWTHGEELPNWYGRQILDSDAIKDDKVWSAQPFSSLDRVEQRIPDRTKLYPEPQRQLHQD
HNQQQFSSEPILVPKSSFVSYPPPGSISPDQRLGHPNIPYQSGGPQMGSPNFSPFPNLQP
QLPSMHHGSPQHTGNRPQFRPALPLNNLPPAQWMNRQNMHPGDSSGIMNNAMLQQPPHQN
GLMPPQMQGSQNRLPHPMQPPLGHMPGMQPQLFNSHLSRSSSSGNYDGMLGFGDLREVRP
GSGHGNRQNVRFPQQGFDAGVQRRYPFRSKYMSAGEIENILRMQLVATHSNDPYVDDYYH
QACLAKKSAGAKLKHHFCPNHLRDLQQRARSNNEPHAFLQVEALGRVPFSSIRRPRPLLE
VDPPNSAKFGNAEHKPTDKPLDQEPMLAARVYIEDGLCLLLEVDDIDRFLEFNQLQDGGH
QLKQRRQALLQSLAVSLQLGDPLAKNGQSQSLDDFLFLRVISLPKGRKLLIRYLQLIFPG
SDLMRIVCMAIFRHLRSLFGVLSSDPDIIKTTNKLATVINLCIQNMELGPVSTCLAAVSC
SSEQAPLRPLGSPVGDGASTVLKSILDRASELIRANNFNNAGIALWRASFNEFFNMLMRY
CISKYDSIMQSLQLPPHFATEISEEAAKAIVREMPIELLRSSFPHIDEQQKRILMEFLKR
SMLGSQKTEPVLS
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggacgcttttggaatcgggagtagtttaaatcaagctcccgtaactcaggatcttaag
aaatttggagataattctacaggtaacacaatgtttgatgcatctcaatatgcctttttt
gggaacgatgttgtcgaggaggttgagctgggtggattggaagaagaagatgagattttg
tctttcactggaatagcagaagacttttcatttgataaggaagaggttggagattctaga
cttctgtctgacgttgatgatcttgctagtactttttcaaagttgaatagggaacctgat
gtgtatagtaatacggggccaatcactgataggcgatcaagtcagaattctttagctgct
gagtggacccatggggaagagttaccaaattggtacggccggcaaatactggactctgat
gccattaaagatgacaaggtgtggtcagcacagccattttcatctctggaccgtgttgag
cagagaatccctgacagaacaaaattgtatccagaaccacaacgtcaactgcatcaagac
cataatcaacaacagttttccagcgaaccaattcttgtcccgaagtcatcttttgtttca
taccctcctccaggcagcatatcaccagatcagcgtttaggacaccctaatataccatat
caatctggtgggcctcaaatgggatcgccaaacttttctccttttccaaatttgcagcct
cagttgcctagcatgcatcatggatcaccgcagcatactggaaacaggcctcagtttcgt
cctgctcttcctctgaataatctccctccagctcaatggatgaatcgtcaaaatatgcat
cctggggatagttccgggatcatgaataatgcgatgctacaacagcctcctcatcaaaac
ggtttgatgcctccacagatgcagggctctcagaataggttaccacatccgatgcagcct
cctctcgggcatatgccaggaatgcagcctcagttatttaattcccatctttctcgatca
tcatcctctggaaattatgatggaatgcttgggtttggtgatctgagggaagtaagacca
ggatcaggtcatgggaacagacagaatgtgcgttttccccaacaaggctttgatgctggc
gttcagagaagatatccattccggtctaaatatatgtcagctggtgagatagagaatata
ctgagaatgcagcttgttgctacacacagcaatgatccttatgttgatgattactatcac
caagcctgtcttgctaagaaatctgcaggtgcaaaactgaagcatcatttctgtccaaat
catttgagggaccttcaacagcgtgcacggtcgaacaacgagccccatgcttttcttcag
gttgaggctcttggtagggttcctttctcttcaatccgcaggcctcgtcctctgcttgaa
gtggaccctccaaattcagctaaatttggtaatgcagagcataaacctacggataagccc
cttgatcaagagccgatgcttgcagctagagtgtacattgaggatggtctttgtctcctc
cttgaagttgatgatatagatcgtttcttggagtttaaccaactccaggacggaggacac
cagttgaaacaaagacgacaagcattgttgcagagccttgcggtttcacttcagctcggt
gatcccctcgccaagaatgggcaaagccagtctcttgatgattttctctttctaagggtt
atctctcttccaaagggtcgaaagctacttataaggtatcttcagctaattttccctggc
agcgacctaatgcggatagtttgcatggccattttccgtcatttaaggtcattgttcgga
gtcctttcatctgaccccgatatcatcaaaaccacaaataagcttgcaacagttatcaac
ttgtgcattcaaaacatggagttaggaccggtaagcacgtgtctagcagcggtgtcttgt
tcttctgagcaggcaccgctccgccccttaggcagtcctgttggagacggagcttccaca
gtattgaaatcaatactcgacagagcttccgagcttatccgggctaataatttcaacaac
gcagggatagctctatggcgcgcttcctttaatgagttctttaatatgttgatgaggtac
tgcatcagcaaatacgatagcatcatgcagagtttgcaattgccaccgcattttgccact
gagatatctgaagaagctgcaaaagccattgtccgcgaaatgccaatagagcttctacgt
tcaagtttcccacacattgatgagcagcaaaagaggatactgatggagtttttgaaacga
tctatgctcggaagccagaaaaccgagccagtattaagttga
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