Arabidopsis thaliana (thale cress): AT2G01130
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Entry
AT2G01130 CDS
T00041
Name
(RefSeq) DEA(D/H)-box RNA helicase family protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT2G01130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT2G01130
03012 Translation factors [BR:
ath03012
]
AT2G01130
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AT2G01130
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
AT2G01130
Translation factors [BR:
ath03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
AT2G01130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
NPHP3_N
nSTAND3
AAA_19
ATPase
Dicer_dimer
ABC_tran
AAA_11
PhoH
ATPase_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
814642
NCBI-ProteinID:
NP_178223
TAIR:
AT2G01130
UniProt:
F4IM84
LinkDB
All DBs
Position
2:complement(88320..94753)
Genome browser
AA seq
1113 aa
AA seq
DB search
MTNRLPPSLYVPPHQRLGSDYGFNPVPLSPVRYVSAYDDRVSEDRQPQEGTFHCADLDDW
NKRFSMLLKDSLKQEVISREKKDRRDFDKLAALATTLGLYSHAYAKVVVFSKIPLPNYRF
DLDDKKPQREVNLHTDLLQRVEAYLTEYLSKSSNRIDRVPANSVSRTSSISSTDEWFSEQ
PLPISATKILWQRSLQLRDRQQYWQASVEGQRMLDSRTSLPAFKQRHSVLTAISQNQVIV
ISGETGCGKTTQIPQFILESEIEANRGAFSSIICTQPRRISAMSVSERVAYERGEQLGES
VGYKVRLEGVKGRDTRLLFCTTGILLRRLLVDRNLRGVTHVIVDEIHERGMNEDFLLIIL
KDLLSRRSELKLILMSATLDAELFSSYFGGAGVIYIPGFTYPVRSHFLEDILEMTRYRLT
PYNQIDDYGQERTWKMNKQIPKKRKSQITFVVEDALRAADFKEFSPETRESLSCWYPDCI
GFNLIEFLLCNICENEGPGGILIFLTGWDDISSLKEKLQIHPIFGNPDLVMLLACHGSME
TFEQRLIFEEPASGVRKIVLATNIAETSITINDVAFVIDCGKAKETSYDALNNTPCLLPS
WISKVSAQQRRGRAGRVRPGQCYHLYPKCVYDAFAEYQLPEILRTPLHSLCLQIKSLNLG
SISEFLSRALQSPELLAVQKAIAFLKIIGALDENEDLTTLGRYLSKLPMEPKLGKMLILG
AILGCLDPILTVAAGLSVRDPFLTPQDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKKAE
EESAVYDYCWKNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNPSICNSEGNDANLTRAVI
CYGMYPGICSVVHNERSFSLKTMEDGQVLLYSNSENARETKIPYPWLVFNEKIKVNSVFL
RDSTACSDSTLILFGGSISKGDTDGHLKMLGGYLEFFMKPDVAEIYQTLKKELDELIQNK
LLNPKVDMQAHRELLSAIRLLVSEDGCDGRFVFGHQILRPLEISALSTKPSLFSRTESGP
GGDNSKSQLQTILTRAGYTVPMYKTKQLKNNKFQTTVEFNETQIMGQPCSNKKSAEKDAA
AEAIQWLKGGAKESHEQVNHMSKLLKKGKKDHL
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatcgtcttcctccttcgctgtacgttccgcctcaccagcgccttggttccgat
tacggcttcaatcctgttcctctctctccagttcgctatgtctccgcttatgatgaccgc
gtttccgaggatcgccaaccgcaggagggtacctttcactgtgccgacttggatgattgg
aataagagattttcaatgcttttgaaagattctttaaagcaagaagttatttccagggag
aaaaaagatagacgggattttgataaacttgctgctctggctacaaccctgggattgtat
agtcatgcatatgctaaggttgttgtcttcagtaagatcccactccccaactataggttt
gatttagatgacaagaagccacagagggaggtgaatttgcatactgaccttcttcaaaga
gttgaagcttacctcacagaatacctcagtaaaagctctaataggatagatagagtccct
gccaattccgtctcaagaactagtagcattagcagtactgatgaatggttttctgagcaa
ccactacccatctctgccaccaaaattctttggcaaaggagtttgcagctgcgtgatcga
caacaatattggcaggcatccgtagaaggccaaagaatgttggattctcgtacaagtctc
cctgctttcaagcaaaggcattcagtattgacagctatttcacaaaatcaggttattgtt
atctctggagaaacaggttgcggcaagaccacacaaatcccgcagtttattttagaatcc
gagattgaagcaaaccgtggagctttttccagtatcatatgtactcaaccaaggagaata
tctgctatgtctgtttcggagagggttgcttacgagagaggagagcagttgggtgaatct
gttggatataaagttcgattggaaggtgttaaaggaagagatacccgcttactcttctgc
accacaggcattttgttgagacgcttgttggtagatagaaatttaagaggagttactcat
gttatcgtggatgaaattcatgagcgtggaatgaatgaagatttccttcttatcattctt
aaggatctgctatctcgtcgctcagagcttaagctgattttgatgagtgcaactttagat
gcggagcttttctcgtcatactttggtggggcaggtgtcatttatattccaggatttaca
tatccagttcgtagtcatttcctagaggatattctggagatgacccggtacagattgact
ccatacaatcaaattgatgattatggtcaagaaagaacgtggaagatgaacaaacagatc
ccaaaaaaacggaagagccaaattacctttgtcgttgaggacgcactgagagcagctgac
ttcaaggagtttagccctgagactcgagagtctttatcttgttggtatcctgattgcatt
ggttttaacctcatagaatttctcctttgcaatatatgtgagaatgagggtcctggtggt
attttaatttttttgactgggtgggatgatatcagctctctgaaagaaaaactgcagatt
catccgatctttggcaacccagatttggttatgttgcttgcctgccatggttctatggaa
acttttgagcagaggttaatatttgaagaacctgcaagtggagtaagaaagatagtccta
gccactaatatcgcagaaacgagcatcacgatcaatgatgttgcttttgtcattgactgt
ggaaaggcaaaagagacctcctatgatgcattaaacaataccccctgtttgcttccttct
tggatttccaaggtttcagctcagcagagaagaggaagagccggtcgtgttcgacctgga
cagtgttaccatctttacccaaagtgcgtatatgatgcttttgcagaatatcagttgcct
gaaattttaaggacgcctttacactcactgtgcctgcaaatcaaaagcttaaacctcgga
agcatatccgagttcttgtcaagggcgctgcaatctcctgaactactagccgttcaaaag
gccatcgcatttctgaagataattggcgcattggatgagaatgaagacctcacgactcta
ggtcgttatttgtccaagcttcccatggagccaaagcttggaaaaatgctcatactagga
gctattcttggttgccttgatcccatattgactgttgcggctggcctgagtgtgagagat
cctttcttgacacctcaggacaagaaagatctcgcagaagccgcaaagtcccagttttca
cgtgatcacagtgatcatcttgcacttgttcgggcatatgaggggtggaaaaaagctgag
gaagagtctgctgtatatgattactgctggaaaaactttctgtcaatacagtcgctgaga
gctattgattctcttcgaaaagagttcttctcattactcaaagatactggacttatagat
ggaaacccatcgatctgcaattcagaggggaatgatgcaaatcttacccgagcagttatt
tgctatggcatgtatccaggaatctgctcagttgtgcataatgagagatcattttccctg
aagacgatggaggatggccaagttcttctttactcaaattctgaaaatgcaagggagaca
aaaataccatatccgtggttggttttcaacgagaagataaaagtgaactccgttttcttg
agggattcgacagcctgctctgactctactcttatcctctttggcggtagcatctccaaa
ggagacactgatggccacctgaaaatgttgggaggatacttggagtttttcatgaaacct
gatgttgcagagatataccaaaccttgaagaaagagcttgacgagctaatacagaacaaa
ctacttaatcctaaagtggatatgcaagcacaccgtgaactcttatcagctatacggttg
ttggtctctgaggatggatgtgatggaagatttgtgtttggtcaccaaatacttaggcct
ttggaaatatcggcgttgtcaacaaaaccgtcattgttttcaaggaccgaaagtgggccg
gggggtgacaattccaaaagtcagctccaaacaatactcacgagggctggttatacagta
ccgatgtataagactaagcagttgaagaacaacaagttccaaacaacagtagagtttaac
gagacacagatcatgggacagccttgcagcaacaagaagagtgctgagaaggatgcggca
gctgaagctatacaatggctgaagggaggggctaaggaaagtcatgagcaggtgaatcat
atgtcaaagctgctgaagaaaggcaagaaagatcacctctga
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