Arabidopsis thaliana (thale cress): AT2G16940
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Entry
AT2G16940 CDS
T00041
Name
(RefSeq) Splicing factor, CC1-like protein
KO
K13091
RNA-binding protein 23/39
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT2G16940
Spliceosome [BR:
ath03041
]
Common components
Common spliceosomal components
General mRNP proteins
AT2G16940
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_7
Motif
Other DBs
NCBI-GeneID:
816197
NCBI-ProteinID:
NP_001189537
TAIR:
AT2G16940
UniProt:
F4ILE0
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All DBs
Position
2:complement(7342607..7347464)
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AA seq
599 aa
AA seq
DB search
MDFDEYEYLEKTVENPHLENEVGNGGGDEKVKSEGKERSRSSRHRGDKKKERDEDEDGRR
SKRSRSHHRSRSRDRERDRHRSSREHRDRDREKDVDKEERNGKDRERDRDKDRDSKGRDH
EKDRSRRSRSRSERHRSQEREKSLEIEPKERETKDRDRDRRFILMLLGPLVLPSVQLDGA
LPCRDFSCFIRHKDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVCPF
LCRFHVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKN
LVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETG
LCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDD
GGGLSLNAQSRALLMQKLDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAG
LAGSGIIPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLN
HIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFPESKVV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggactttgatgagtatgagtacttagagaagacagttgaaaatcctcacctggagaat
gaagttggtaatggtggtggtgatgagaaagtcaaatctgaagggaaagagaggagtagg
agctcaaggcataggggtgacaagaagaaggagagggatgaagatgaggatggtcggcgt
tctaagcggtcgagatcgcatcaccgttcacgttctagggacagagagagggataggcat
agaagtagcagggagcacagagatagagatcgtgaaaaggatgtagataaagaagaaaga
aatgggaaagatagagagagggacagagataaggatcgagacagtaaagggcgtgaccat
gaaaaagatcggtcacgaagaagtagaagtcgatcagagcgacatcggagtcaggaaaga
gaaaagagcttggaaatagaacctaaggaaagagagaccaaggaccgggatagagatcgc
aggttcatactaatgctattaggtccattggtattgccttctgtacaacttgatggggca
cttccctgcagggacttctcgtgcttcatacgccataaagataagaaggaggataaggta
gagcctgaggctgatcctgaaagagatcagagaacagtttttgcatatcagattgctttg
agggcaactgaaagggatgtatatgagttcttttccagagctggaaaggtttgtccattc
ctctgccggtttcatgtgcgagatgtacggataataatggatcgaatttccaggcgttcc
agaggaatagggtatgtggagttttatgatacaatgtctgtccctatggctattgctcta
tctggacaacctcttcttggtcagcctgttatggtaaaaccttctgaagctgagaagaat
cttgttcagtcaacaactgctgctgctggagcaggggggatgttgggcccctactccggg
ggagctaggcgtctttatgttggtaacctccacattaacatgtcagaagatgatttgcga
aaggtatttgaatcatttgggagtgtggagctggtgcaagtacctcgtgatgaaactggt
ctctgcaaaggatttggttttgttcagtttgcccggctggaggatgctagaaacgcactg
aatctaaatgggcagttggaaattgcaggtcgtgcaatcaaggtgtcagctgtaactgat
caaactgaagtcccagaagctggacagacgcaaaccaccggtgatttggatgatgatgat
ggaggtggcctgtctctgaatgcacaatcgcgggcgcttctcatgcaaaagctcgatcgc
agtggaactgcatcgagcactggccttactacagctgcatctttcaacggtggagtttca
acaatctcttcgttggcagctcctgctcttgtacaagggtcttttcctgctgttgctgga
ctcgcagggtccggcattattcccggtgttataccagctggtttcgacccaattggtgtc
cccagcgaatgtctgctgcttaaaaacatgtttgatccatccacagagactgaagatgat
tttgatgaggatataaaagaagatgttaaagaagaatgctccaaattcggaaaactgaat
catatctttgttgacaagaacagcgttggttttgtctacctgagatttgagaatgcgcaa
gcagccataggtgcacaacgtgctctccatggaagatggtttgctggaaagatgattact
gcgacttacatgactacagaggcttacgaggccaaattccccgagagtaaggtcgtttaa
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