Arabidopsis thaliana (thale cress): AT2G20020
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Entry
AT2G20020 CDS
T00041
Symbol
CAF1
Name
(RefSeq) RNA-binding CRS1 / YhbY (CRM) domain-containing protein
KO
K27709
CRS2-associated factor 1, chloroplastic
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT2G20020 (CAF1)
Spliceosome [BR:
ath03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
AT2G20020 (CAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRS1_YhbY
Motif
Other DBs
NCBI-GeneID:
816521
NCBI-ProteinID:
NP_565462
TAIR:
AT2G20020
UniProt:
Q9SL79
A0A5S9WZG4
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All DBs
Position
2:8644369..8647291
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AA seq
701 aa
AA seq
DB search
MSLKLNTPFPIFAPSLFPNHNPRAPSEIRFSRWGNANAERFEQRRRSQEELEAEIRRDRR
FDAATKIVHTHDSEAAAAEPKTSPFRSRGTPSLPSARSIPGRRSKYSKPDSGPNRPKNKP
RVPDSPPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTETPKVKPLKLREPAYAPFGPTT
MGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKPGPFRPGVGPRYVYSKEEILG
EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD
NVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEG
LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKI
GAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGDILEDIEVDTALPEDDEPSVS
PNQSQTMTQNPPLDSMELQNDPDGHDLSPSTVDSSEMEGTINSLQSWSTKDVTEPTVDSF
LRDLEEPEDEPETSEEISKQSIERVLILMKQAVESGTALVLDAADLDADTVFSKAVAFSS
VASPGPVFQHGLRKQPTVKKQESQEFGYGDLEAKSSNVVVSRNASKSSNVVVFGKREVAE
RGEREEKEEGSKKKMDEFAEDYREVMPHGTLKVDELAKLLA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttaaaactcaacactccttttccaattttcgcgccatctctatttcctaatcat
aacccaagagcacccagcgagatccgattctctagatggggcaacgctaatgccgaacgg
ttcgagcagcgtcgccggagccaagaagaactcgaggctgagatccgtcgggaccgccga
ttcgacgccgctactaaaatcgtccatacccatgattccgaagcagcagctgctgagcct
aaaacgtcaccgtttagatcaagaggcactccttcacttccctctgctcgttcgattccg
ggtcgaagatccaaatactccaaacccgattcaggacccaatagacccaagaacaaacct
agagtacccgattcgccgccgcaactagacgctaagcctgaggttaagctaagcgaagat
ggattaacttacgtcatcaatggagctcctttcgaattcaagtacagttacacggagacg
ccaaaggttaagcctttgaagcttcgtgagcctgcttacgcgccttttggacctacgact
atgggaaggccatggactggtcgtgctccgcttcctcagtcgcagaagacgccgagagaa
ttcgattcttttcgattgcctcctgtggggaagaaagggctgaagccggtgcagaaaccg
ggtccttttcgacccggggtaggtccaaggtatgtttactccaaggaggagattttagga
gagccattgacaaaggaagaggtcagagagctggttacttcttgcttgaagacaacaagg
caattgaatatgggcagagatggtttgacgcataacatgttgaacaacatacatgatcta
tggaagcggcgaagggtttgtaagattaaatgcaaaggagtttgtacagtcgatatggat
aatgtttgcgagcagttagaggagaaaattggtgggaaggtgatatatagaagaggaggt
gtgcttttcctattccgtggcagaaactataaccacaggacaagaccgcggttccctctt
atgttgtggaagcctgtagcacctgtttatccaaggctaattcaacaagtgcctgagggt
ttaactcgtcaggaagctaccaatatgcggaggaaaggacgagagctcatgcccatttgc
aagctagggaagaatggtgtgtattgtgatcttgtgaaaaatgttaaagaagcatttgaa
gtttgtgaattggttcggatcgattgtcaagggatgaaaggcagtgattttaggaaaatc
ggtgccaaactcaaggatcttgttccatgtgtgctcgtatcttttgaaaacgagcagatt
cttatctggagaggacgagaatggaaatcgtctctcacaactccagataaaaagggtgat
atccttgaagatatcgaagttgatactgccttgccagaagatgacgaaccatcggtgtca
ccaaatcagagtcaaactatgacccagaaccctcctctggattctatggaactgcaaaat
gatccagatggtcacgatttgagcccttcaactgtagattcctcggaaatggaaggcaca
atcaattctttacagagctggtctacaaaagatgtaactgagccaacggtagatagtttt
cttcgagaccttgaagaacctgaagacgaaccagaaacatcggaagagatcagcaaacaa
agcatagagagagttctgattttgatgaaacaagctgtggagagcgggactgcacttgtg
ttagatgctgctgatctggacgcagacacagtcttttcaaaagctgttgccttttcgagt
gtagcttcaccaggaccagttttccagcatggcttgagaaaacaaccaacggttaagaag
caggaaagccaagaattcgggtacggagacttggaggcaaaatcaagtaatgtagtggtt
tctaggaatgcttccaaatcaagtaatgttgtggtttttgggaaaagagaagttgcagag
aggggggaaagagaggagaaggaggagggatcgaagaagaaaatggacgagtttgctgaa
gattacagagaagtgatgccgcatggaacattgaaggtagatgaactagctaaactactt
gcataa
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