Arabidopsis thaliana (thale cress): AT2G22620
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Entry
AT2G22620 CDS
T00041
Name
(RefSeq) Rhamnogalacturonate lyase family protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
AT2G22620
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
AT2G22620
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
Motif
Other DBs
NCBI-GeneID:
816793
NCBI-ProteinID:
NP_001189578
TAIR:
AT2G22620
UniProt:
F4IJK8
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Position
2:complement(9604772..9610661)
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AA seq
597 aa
AA seq
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MKVGAPASKPGRIIVQVFLLQLLLLLQSVHSQRSQNKLNITKPGQNIPALTVQLRRVGHD
TVVVDNGIVQVTFSNPEGLITGIKYHGIDNVLDDKIDDRGYWDVVWYEPEKKQKTDKFDF
MAISDDRQRSMPSMADRENSKSLAYKEAVLLTNPSNPMFKGEVDDKYMYSMEDKDNNVHG
WISSDPPVGFWMITPSDEFRLGGPIKQDLTSHAGPITLSMFTSTHYAGKEMRMDYRNGEP
WKKVFGPVLAYLNSVSPKDSTLRLWRDAKRQMAAEVKSWPYDFITSEDYPLRHQRGTLEG
QFLIKDSYVSRLKIYGKFAFVGLAPIGEAGSWQTESKGYQFWTKADRRGRFIIENVRAGN
YSLYAWGSGFIGDYKYEQNITITPGSEMNVGPLVYEPPRNGPTLWEIGVPDRTAGEFYIP
DPYPTLMNKLYVNPLQDRFRQYGLWDRYADLYPQNDLVYTIGVSDYRSDWFFAHVARNVG
NDTYQPTTWQIIFNLKNVNRIGRYTLRIALASAADSELQIRINDPKSDAIFTTGFIGKDN
AIARHGIHGLYRLYSIDVAGNLLSVGDNTIFLTQTRSRTPFQGIMYDYIRLESPFRT
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttggagctccggcaagtaagccgggtcggatcattgttcaagtttttcttcta
caacttcttcttcttcttcaaagtgttcattcacagagatcacaaaacaaacttaacatc
acaaagcctggacaaaacataccagccttaacagttcagctaaggagagttggccatgat
acggtggtagttgataatggtattgtccaagttactttctcgaacccagaaggcttaata
actgggataaaataccatggtatcgataatgtgttggacgacaaaattgatgatcgcggg
tattgggacgtagtctggtatgaaccggaaaagaaacagaagactgacaaatttgatttc
atggcgatatccgatgatcggcagagaagcatgccatcgatggcagatcgagaaaattct
aagtcattagcttacaaagaagctgttcttttgacaaatccaagcaaccctatgttcaaa
ggagaggtggatgataagtatatgtactcaatggaagacaaagacaacaatgtgcatggt
tggatctcatcagacccacctgttgggttttggatgataactccgagcgatgagttccgt
cttggtggccccatcaagcaagacctcacctctcatgccggacccatcacactctccatg
tttacgagcacgcattatgcgggaaaagagatgagaatggattatagaaatggagagcca
tggaagaaagtttttggtcctgtcttggcttatctcaactctgtctctcccaaagattct
actcttcgtctctggagagatgctaaacgacagatggctgcagaagtcaaaagctggcct
tatgattttataacttcagaagattatcctcttcgccatcaaagaggaactctcgaaggt
caattcttaatcaaagacagttacgtgtcaaggttaaagatatatggaaaatttgctttt
gttggtttggccccaattggtgaagctggttcatggcaaaccgaatcaaagggttatcaa
ttttggacgaaagctgacaggagagggagattcataatagagaatgtgagggcaggcaat
tatagtctctacgcatgggggtctggttttattggagactataagtatgagcaaaacatt
accatcacgccaggtagcgagatgaatgtagggcctttagtgtatgaaccgccgagaaac
ggtccaacattgtgggaaatcggtgtaccggatcgaaccgcaggtgaattctatataccg
gatccttaccctacactgatgaataagctttatgtcaacccactccaagacagatttagg
caatatggattatgggatcgttacgcagatttataccctcaaaacgatcttgtctacaca
atcggtgtaagtgattatagaagtgattggttctttgcacatgtggcgagaaacgttggt
aacgatacataccaaccaacaacatggcaaatcatattcaacctaaaaaacgtgaaccgt
atcggacgctacacactccgaatagctctagcatcagcagctgattcggaactacaaatc
cgaatcaacgatccgaaatccgatgcgattttcacaaccggttttatcggaaaggacaat
gcgatcgcaagacatggaattcatggattatatagattgtatagtatcgacgttgctgga
aatttactaagtgttggtgataatacaatatttttaactcaaaccagaagtagaacacca
tttcaaggtattatgtatgactatattcgtcttgaaagtccttttagaacttga
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