Arabidopsis thaliana (thale cress): AT2G25355
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Entry
AT2G25355 CDS
T00041
Name
(RefSeq) PNAS-3-like protein
KO
K03681
exosome complex component RRP40
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT2G25355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT2G25355
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AT2G25355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP40_S1
KH_6
Rrp40_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
817074
NCBI-ProteinID:
NP_001077958
TAIR:
AT2G25355
UniProt:
A8MQZ8
LinkDB
All DBs
Position
2:10801091..10803722
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AA seq
213 aa
AA seq
DB search
MTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCK
GENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESG
KAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKLSFETAFGLNGRCWVHAAAPR
IVIIVANALMNSETLSGTQQRIMVEKLLEKISD
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgactaaccaaacaatcaaactcggcagtggtctccgtcaggataatgaggtgatatct
gttatgagagctgggaagttgaggtactctaagccaaataagtattgggtggaaagttct
cataaaaggtatgtacctcgtcctgaggatcatgttcttggcattgtggtagattgtaaa
ggagaaaactattggatagacattaaaggaccacaattggctcttttgcctgtgcttgca
tttgaaggagcaaacagaagaaattatcccaagtttgaggtaagcactctgctttatact
cgggttgtgaagacaaacacaggaatgaacccggagctgtcatgtgtagacgaaagtgga
aaggctgcaggatttggtcccttaaaagatggtttcatgtttgaaacttcaactggttta
tctagaatgttgttgagttcaccaacttgcccggtccttgaagctcttggaaagaaactc
tcgtttgagactgcgtttggcttaaatgggagatgttgggtgcatgcggctgctcctcgt
atagtgattatcgtcgccaatgcgttgatgaattctgaaactttaagcgggacacaacag
agaatcatggtagagaaattgctggagaaaatttcagactga
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