Arabidopsis thaliana (thale cress): AT2G27600
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Entry
AT2G27600 CDS
T00041
Symbol
SKD1
Name
(RefSeq) AAA-type ATPase family protein
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03250
Viral life cycle - HIV-1
ath03272
Virion - Hepatitis viruses
ath04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
AT2G27600 (SKD1)
03272 Virion - Hepatitis viruses
AT2G27600 (SKD1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
AT2G27600 (SKD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT2G27600 (SKD1)
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT2G27600 (SKD1)
Membrane trafficking [BR:
ath04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
AT2G27600 (SKD1)
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
Check point factors
Other check point factors
AT2G27600 (SKD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Vps4_C
MIT
AAA_lid_3
AAA_16
AAA_5
RuvB_N
AAA_22
TIP49
AAA_14
DUF815
AAA_2
NPHP3_N
AAA_17
RNA_helicase
AAA_33
IstB_IS21
AAA_24
AAA_28
AAA_25
Parvo_NS1
Mg_chelatase
AAA_18
nSTAND_NTPase5
AAA_7
nSTAND3
USP8_dimer
PhoH
Torsin
ResIII
bpMoxR
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
817306
NCBI-ProteinID:
NP_180328
TAIR:
AT2G27600
UniProt:
Q9ZNT0
A0A178VQU8
LinkDB
All DBs
Position
2:11780896..11783992
Genome browser
AA seq
435 aa
AA seq
DB search
MYSNFKEQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT
EYLRRAEEIRAVLDEGGSGPGSNGDAAVATRPKTKPKDGEGGGKDGEDPEQSKLRAGLNS
AIVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSY
LAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTR
GEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRRRFDKRIYIPLPE
AKARQHMFKVHLGDTPHNLTEPDFEYLGQKTEGFSGSDVSVCVKDVLFEPVRKTQDAMFF
FKSPDGTWMPCGPRHPGAIQTTMQDLATKGLAEKIIPPPITRTDFEKVLARQRPTVSKSD
LDVHERFTQEFGEEG
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcaatttcaaggaacaagcgatcgagtacgtgaagcaagcggttcatgaagac
aatgctgggaattacaataaagctttccctctatacatgaacgcgcttgagtacttcaaa
actcatctcaagtatgagaagaaccctaagatcagagaagctattacccagaaattcacc
gagtatctccgtcgtgctgaggagatccgtgctgttctcgatgaaggtggatcgggtcca
ggatctaacggtgatgcagccgtcgcaacgaggcccaaaactaagcctaaagatggagaa
ggtggtggtaaagatggagaagatcctgaacaatcaaagcttcgagctgggttaaactct
gcgattgttagagagaaacctaatatcaagtggtcagatgttgctgggcttgaaagtgct
aaacaagctctgcaggaagctgtgattttgcctgtcaagtttccacagttcttcactgga
aagagacggccttggagagcttttctgttgtatgggcctcctggaacaggaaaatcgtat
ttggctaaggctgttgccactgaagctgactctaccttttttagcgtgtcttcatcagac
cttgtctcgaagtggatgggtgaaagtgagaagctagtatcaaaccttttcgagatggcc
cgtgaaagtgctccctcgattatttttgttgatgagatagattctttgtgtggtacacgt
ggagaaggaaacgagagtgaagcttcaagacgtatcaaaacagagcttctagtgcagatg
cagggtgttggacacaatgatgagaaagtacttgtacttgcagcaaccaatacaccctat
gctcttgatcaggctatccggcgacgttttgacaagcgtatctatattcctctcccagag
gccaaggctcggcagcacatgttcaaagtccacttgggagatacacctcataatttaact
gaacctgattttgaatatttaggccaaaagacagaagggttttctggttcagatgtgtct
gtttgtgtaaaagatgttctgtttgaacctgttcgtaaaacacaagatgcaatgttcttt
ttcaagtctcctgatggtacatggatgccatgtgggcctaggcaccctggtgccatccag
actacaatgcaagatctagcaacaaaagggcttgccgaaaagattattccaccaccaatc
accagaacagatttcgagaaggtacttgcaagacaaaggccaacagtgagcaagtctgac
cttgatgtccacgagagattcacacaggagtttggagaagaaggttga
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