Arabidopsis thaliana (thale cress): AT2G27900
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Entry
AT2G27900 CDS
T00041
Name
(RefSeq) coiled-coil protein
KO
K23288
syndetin
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT2G27900
Membrane trafficking [BR:
ath04131
]
Protein recycling
Others
EARP complex
AT2G27900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
817335
NCBI-ProteinID:
NP_180357
TAIR:
AT2G27900
UniProt:
A0A178VVF6
Q8RXC2
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All DBs
Position
2:11877421..11886013
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AA seq
1124 aa
AA seq
DB search
MQPNLFFPFGSVLGNPFLFNGGGDLNELGSGAAFESSRVFFLLPFLLSQGTGVMDLSKVG
EKFLSSVKSATSLGLLPSPSISDRPEIPARAAAAAAVARALAGLPSDQRLSISSTATELN
SIYGNRPLPQQVEELEEGFYEEDFDPVRHILENVPDDESELAYFEKQATLRLVQLDKVAE
TLSHHVMEHHEVMVKGMNLVRELEKDLKIANVICKNGRRNLTSSMNEASRDLIVHTHSKK
KQALLDMLPILTDLRHARVMQSNLEDLVEDGNYCKAFQVLSEYLQLLDSLSEFSAAQEMT
RGVEVWLGRTLHKLDSLLLGVCQEFKEDSYVMVLDAYALIGDVSGLAEKIQSFFMQEVIS
ETHSVLKSIVGEDNSAATQYSRLTYSDLCLQTPESKFRQCLLRTLAVLFQLIYSYHEIMS
FTPEKEAEILVSPSLATTQMVDSVTGSSCDPQDGGLLPGSIPPCTISAEESDGSGTSSSV
QLASNIAIDESRNSEDRVSSSESPWYYLRKESAAFVSETLQRGRRNLWQLTTSRVSVLLS
SPGASSTSIHQFLKNYEDLSIFILAGEAFCGFEVVDFREKLKGVCENYFTAFHRQSMHAL
KMVLEKETWTKLSPDTVQAINFAGLVGDGAPLIISSRSASGSSRFPHSDKPSNSIDPSGN
RSGFSYWLKSGNPFSAKLTHYREDQDYSSINGEDHEGNDSIHDDVVNPKIRDIKRINGGS
PVSEDENEDLLADFIDEDSQLPRRSFTRSQSRTSSSHFSTNDDLTAQTGSSLCLLRSMDK
YARLMQKLEIVNAEFFKGICQLFGVFFYFVFQVFGQENTNSGGKGVSDSFNHRLKSCLSR
ISQECEQWIKPHVSSSPSSSLAFPNTVHSLADVTPASPLNTSGHLSGVSFSLKERCAAVD
TVSLVARVLHKSKAHLQSMLMSRNGSLVEDFFGQLVGSVPDLTEHLHRTTARILLHVNGY
VDRIANSKWEIKELGMEHNGYVDLMLGEFKHYKTRLAHGGIPQEVQNLLLEYGVEIFAEM
LVEGLSRIKRCTDEGRVLMSLDLQVLINGLQHFVPTKVKPKLQIVETFIKAYYLPETEYV
HWARAHPEYTKAQVVGLVNLVATMKGWKRKTRLEVIEKIESASM
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctaatctcttcttcccattcggttcagttttgggtaatccatttctcttcaat
ggcggtggagatctaaacgaacttggttctggtgctgctttcgagagctctagggttttc
ttcttacttcctttcttattatcccaaggcactggtgtcatggatttatctaaagttggt
gaaaaattcctcagctctgttaaatccgctacttctcttggtctcttaccttctccttct
atctccgatcgtcctgagattccagcacgtgctgcggcagctgctgcggttgctcgtgct
ttggcgggacttccttctgatcagagattgagtatatcttctactgctactgagcttaac
tcaatttatggaaacagacctcttcctcaacaagttgaagagcttgaagaaggtttctat
gaagaggattttgatccggtaaggcatattttggagaatgtgccggatgatgaaagtgag
ttagcttattttgagaagcaggctaccttgaggttggtacagctggataaagtggcagaa
actctgtctcaccatgttatggagcatcatgaagtaatggtgaaggggatgaatttggta
agagaattggagaaagatttgaagattgcaaatgtcatctgcaagaatggaagacgaaat
ttgacttcttctatgaatgaggcttcaagagatcttattgtacacactcattccaaaaag
aaacaagctcttctggatatgcttcctatactaactgacctccgccatgcaagagtaatg
cagtcaaatcttgaagaccttgttgaagatggaaactattgcaaggcatttcaagtccta
tcagagtatttgcagctgcttgacagtctatctgagttctcagcagcccaagagatgacc
cgtggtgttgaggtttggttaggaagaactcttcataagctggattcactgttgttgggc
gtttgccaggaattcaaagaagatagttatgtaatggtcctcgacgcttatgcactgatc
ggtgatgtctctggtctcgcagaaaagatacaaagtttctttatgcaagaagttatctca
gaaacccactcagtgctaaagagcattgttggggaggataacagtgctgccacccaatat
agtagacttacctacagcgatctatgccttcaaacaccagaatccaagtttaggcaatgt
cttttgagaacactagctgtgctttttcagttaatatattcataccatgagataatgagt
ttcacgccagaaaaggaggcagaaattttggtctcacccagtcttgcaacaactcaaatg
gttgattcagtgaccggaagttcatgtgacccacaggatggtggtctattgccgggaagc
atacctccttgtaccatttccgctgaagagtcggatggaagtggaacatccagttcagtg
cagctggcgtctaatattgcaatagatgagtctaggaattctgaagatagagtatcaagt
agcgagtcaccatggtactatttacgaaaagaaagtgcagcttttgtttcagaaactctt
cagagaggacgcagaaatctttggcaacttacaacaagccgtgtgtcagttttgctctct
tccccaggtgcttcttcaacaagtatacatcagttcctaaaaaattatgaagacctgagc
atctttatccttgctggggaagcgttctgtggatttgaagttgttgattttagggagaag
ctaaagggtgtatgcgaaaattatttcactgcatttcataggcaaagcatgcatgcgctt
aaaatggtcctggagaaggagacatggacgaaattgtcaccagatactgtgcaagctatt
aattttgctggtcttgtgggggatggggctcccctaattatttcttcccgcagtgcctca
ggttcttccagattccctcactctgataagccaagtaactcaattgatccaagtggcaac
aggagtggattttcatattggctgaaaagtgggaacccgttctcagcaaagttaactcac
tatagagaagatcaagactactcctcgatcaatggagaagatcatgaagggaatgatagt
attcatgatgatgttgtgaatcccaagataagagacataaaacgcatcaacggaggtagt
cctgtttcagaagatgaaaacgaagaccttcttgctgactttattgatgaggatagccag
cttccaagacgaagttttacacgtagtcaatcaaggacttcttcttcacattttagtact
aatgatgatttgacagctcaaacaggatcatccctttgtcttctaagatctatggataag
tacgcgaggcttatgcagaagctagaaattgttaatgctgaattctttaagggaatatgc
caattgtttggagtctttttctatttcgtgtttcaagtatttggtcaagaaaatactaat
tcaggtggaaaaggagtttccgactctttcaatcatcgtttgaaaagctgcttatcacgg
atatcacaagagtgtgagcaatggataaaacctcacgtttcatcatcaccatcttcttca
cttgcctttcccaacactgttcatagtcttgcggatgtgactccagcaagtcccttaaat
acttctggtcacttatcaggcgtatcttttagtctcaaggaaagatgtgctgctgtggac
acagtatctcttgtggctcgggtattgcataaatcaaaggctcatctccaatcaatgctt
atgtcaagaaatgggtctctggttgaagacttctttggtcaactggttggttccgtacct
gatctgacagagcacttacataggacaactgcgaggatactgctgcatgttaatggatat
gtcgatcggatagctaattctaaatgggaaatcaaggagcttggaatggagcataatggg
tatgttgatttgatgctcggggaattcaaacactacaaaacaaggcttgctcatggaggc
attccacaggaggtccaaaacctcctacttgaatatggagttgaaatatttgcggagatg
ctggttgaaggcttatctcgaataaaaagatgtactgatgaaggacgtgttctcatgtca
ttagatcttcaggttctaataaatgggttacagcactttgtgccaacaaaagtgaagcca
aagttacagatagtcgaaacatttatcaaggcgtactatctgccagagacggaatatgtt
cactgggcaagggctcatccggaatatacaaaagcacaggtcgttggactggtgaattta
gtagccaccatgaaaggttggaaaaggaaaacgcggctggaagttatcgagaagatcgaa
tcagcgtctatgtag
DBGET
integrated database retrieval system
