Arabidopsis thaliana (thale cress): AT2G29210
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Entry
AT2G29210 CDS
T00041
Name
(RefSeq) splicing factor PWI domain-containing protein
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03013
Nucleocytoplasmic transport
ath03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
AT2G29210
03015 mRNA surveillance pathway
AT2G29210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT2G29210
03041 Spliceosome [BR:
ath03041
]
AT2G29210
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AT2G29210
Spliceosome [BR:
ath03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
AT2G29210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
817470
NCBI-ProteinID:
NP_001324350
TAIR:
AT2G29210
UniProt:
A0A1P8AZU5
LinkDB
All DBs
Position
2:12557979..12562367
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AA seq
859 aa
AA seq
DB search
MSGGFFRGTSAEQDTRFSNKQAKLMKSQKFAPELENLVDITKVKMDVMKPWIATRVTELL
GIEDEVLINFIYGLLDGKVVNGKEIQITLTGFMEKNTGKFMKELWTLLLSAQNNPSGVPQ
QFLDARAAETKKKQEEANEIMKKREGDKKNIEHDILRKIDSGVEHKETNGMDAKPSRDRP
EDGRRADEKNGVKERRRDLIPPRRGDASRSPLRGSRSRSISKTNSGSKSYSGERKSRSTS
QSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGR
RQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRH
RSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRSPLAKRGR
SDSPGRSPSPVARLRDPTGARLPSPSIEQRLPSPPVAQRLPSPPPRRAGLPSPMRIGGSH
AANHLESPSPSSLSPPGRKKVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSM
SPVRGRGKSSPSSRHQKARSPVRRRSPTPVNRRSRRSSSASRSPDRRRRRSPSSSRSPSR
SRSPPVLHRSPSPRGRKHQRERRSPGRLSEEQDRVQNSKLLKRTSVPDTDKRKQLPEKLL
EVGRVEHYKEQERKSDKLSEKRSVHRHHGSQMSPVENSEGRSRPVSSKVKDSEQVEKEDN
SDLDANLSCDSKDTIRHQIKDKNRRKNKRSSREEVSSDDNGSSDSDVDDRKEAKRRRKEE
KKTRKEEKKRRREERHRKREERRGGKEKHKKQELSDTSEGEVEARPKIKKGEESDPKRLE
IELRNKALESLKAKKGISH
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggtttcttccggggtacttccgccgagcaggatactcggttttctaacaag
caagctaaattgatgaaaagccagaaatttgctccggagttagagaatctggtggatatc
actaaagtgaagatggatgttatgaaaccttggattgcgactagagtcactgagcttctt
ggtattgaagatgaagtgctgattaactttatctatggtctgcttgacgggaaggtagtg
aatggtaaggagattcagataacgctaactggattcatggagaaaaatactggcaaattt
atgaaagaactttggacacttcttctaagcgcacagaataatccaagtggtgttccacag
cagtttttagatgctagagctgctgaaacaaagaagaaacaggaagaagcaaatgaaata
atgaagaagagggagggagataagaagaacattgagcacgatatattgaggaaaatagac
agcggtgtagaacataaggagacaaatggcatggatgcaaaaccttcaagagatcgtcca
gaggatgggagaagggctgacgagaagaatggtgtaaaagaaaggagaagggatctgata
cctccacgtcgcggagatgcatcccgctcaccccttagagggtcacgttctaggtcaatc
agcaaaacaaattcaggctcgaaaagttattctggcgaacggaaatccaggagcacatct
caatcatcagatgcctccatctcacctagaaagcgaagattgtcgaattcaagacgtaga
tccagatcacgttccgtgcgtaggtctctgtctcctcggcgacgtaggatacactctcct
ttcagaagcaggtcgcggtcacctattagacgtcacaggcgacctacgcatgagggacgc
cgtcaatcaccagccccttcaagacgtcgccgttctccatccccacctgctagacggcgc
aggtcaccatccccacctgctagacggcgcaggtcaccatcaccacctgctagacggcac
aggtctccaacaccacctgcaaggcagcgcaggtcaccatcgccccctgctaggcgtcac
cgttctccaccgccagctaggcggcgtaggtctccttcaccgccagctaggcggcgtagg
tctccttcaccgccagctaggcggcgtaggtctccatctccactctacaggcgtaacagg
tctccatctccactctataggcgtaacaggtcacggtcaccgctggctaagcggggaagg
tctgactcaccagggaggtctccgtcaccagtggctaggctcagggatcccactggggca
agattgccttcaccatccattgagcaaagattgccttcaccacccgttgcacaaaggttg
ccttcaccaccccctaggcgtgcaggattaccttcaccaatgaggattggaggatctcat
gcagccaatcacctggaatcaccatcacccagctcattgtcccctcctggtaggaaaaaa
gtgttaccatctccacctgttagaagacgcaggtcactgacacctgacgaagagcgagtc
tccctgtcacaaggtggacgccatacttccccttcacatatcaagcaagatggatctatg
tcacctgttaggggtcgaggtaaatcttctccttcatctcgacatcagaaagcgcgctct
cctgttcggcgcagatcaccaacacctgtcaaccggcgaagtcgaagatcttcatctgct
tcacgatcacctgatagacgcaggagacggtctccatcttcgagcagatctccttctagg
tcgcgatcacctcctgttcttcatagatctccttctccacgtggaagaaaacatcagaga
gagagaagatctcctgggcgtctatctgaagaacaagatagggttcaaaattccaagctg
ttaaagagaacttcagtgcctgatactgacaagaggaaacaattaccagagaagttgcta
gaagttgggcgtgtagaacattataaggagcaggagagaaagagtgataagttgtcagag
aagcgatctgttcacagacaccatggttcacagatgtccccagtagaaaattcagaagga
aggagtcggcctgtttctagtaaagtgaaagacagtgagcaggttgagaaagaggataac
agcgacctggatgcaaacctttcctgtgattctaaggataccatcagacatcaaattaag
gataaaaatagaagaaagaataaaaggtcttcaagggaagaagtatcttcagatgataat
ggcagttctgattccgacgtagatgataggaaggaggctaaaaggaggaggaaggaggag
aagaaaacgagaaaggaggagaagaaacgtaggcgagaggagagacatcgtaaaagggaa
gaacgtcgtggtggaaaggagaagcataagaaacaagagctttctgatacttcagaaggt
gaagttgaggcccgtcctaagattaaaaaaggggaggaatctgatccaaagaggcttgaa
attgagttgcgaaacaaagcactcgagtcattgaaagcaaagaagggcattagccactaa
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