Arabidopsis thaliana (thale cress): AT2G30800
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Entry
AT2G30800 CDS
T00041
Symbol
HVT1
Name
(RefSeq) helicase in vascular tissue and tapetum
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT2G30800 (HVT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT2G30800 (HVT1)
03012 Translation factors [BR:
ath03012
]
AT2G30800 (HVT1)
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AT2G30800 (HVT1)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
AT2G30800 (HVT1)
Translation factors [BR:
ath03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
AT2G30800 (HVT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
R3H
HA2_C
HA2_N
AAA_22
Ank_5
nSTAND3
AAA_19
Ank_2
ATPase
NPHP3_N
AAA_7
T2SSE
Rad17
Sigma54_activat
AAA_11
Motif
Other DBs
NCBI-GeneID:
817631
NCBI-ProteinID:
NP_850154
TAIR:
AT2G30800
UniProt:
F4INY4
A0A5S9X2R7
LinkDB
All DBs
Position
2:complement(13120292..13126813)
Genome browser
AA seq
1299 aa
AA seq
DB search
MGNKRFRSDNNAGKPTSVEATRIWATKVIEDFRASGNEVYTFEHNLSNNERGVIHQMCRK
MGIQSKSSGRGEQRRLSIFKSRHKNGNKNEANEKSNKEKLKCVSFPPGADVILQELFTHY
PPCDGDTAATSFTKYSGNKGKQGQWKDDFFRKPQISSEEILEKVASLSSRLKKDKALKEI
TKLRSKLPITSFKDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCKIVC
TQPRRISAMSVSERISCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKGS
VSSVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGGC
PVVRVPGFTYPVRTLYLEDVLSILKSGGDNHLSSTNLSISDHKLDLTDEDKLALDEAIIL
AWTNDEFDALLDLVSSRGSHEIYNYQHQSTWLTPLMVFAGKGRISDVCMLLSFGADWSLK
SKDGMTALELAEAENQLEAAQIIREHADNSQSNSQQGQQLLDKYMATINPEQVDVSLIQQ
LMRKICGDSEDGAILVFLPGWDDINKTRQRLLENPFFADSAKFDIICLHSMVPAGEQKKV
FNRPPPGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANA
KQRQGRAGRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILDPNCKTNDFL
QKLLDPPVDQSIANALSILQDIGALTPQEELTELGEKFGHLPVHPLISKMLFFAVLVNCL
DPALTLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFECWKNAKG
RGLSAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNSRDPGILRAVLA
VGLYPMVGRLCPAFGNNRRTIVETASGAKVRVHSLSNNFNLSSKKYDESLLVFDEITRGD
GGMHIRNCTVARDLPLLLISTEIAVAPTGSSDSDDSNEEEEDDEEVAANTNEEVAANTNE
EGMDIHKEESRRGAKMMSSPENSVKLVVDRWLPFRTTALEVAQMYILRERLMASILFKVT
HPREHLPPHLGASMHAIAGILSYDGHAGLSCPPESMVPKHSRTEMYDTGGWEEKPNSFLN
SLFWSLSLKENKHPSHTNRNQQHNYNMAPTEAASIPRQQNYKQRNPKATNNTDSGKKKEK
MFVNPTNRINQPEAASTGKPSKHKSANSSGSSNKKENMPSDQAYGNKQHNTVPREAAAPM
AKNQSSKKTKTRSGNNSDSGKKKEQYIPKRQREDKAEQK
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atggggaacaagagattcaggtctgataataatgcagggaaaccaacttccgtcgaagct
actaggatttgggcgactaaggtcatcgaagactttcgagcctctgggaacgaagtttac
acgtttgagcataatctatcaaataacgaacgtggagtgattcatcagatgtgcaggaaa
atgggtattcaatcgaaaagttctgggcgtggggaacaaaggcgtctttcgatattcaaa
agtaggcataagaatggaaacaagaatgaagctaatgagaaatcaaataaagagaagctc
aaatgtgtgtcatttccgccgggagcagatgttattctgcaggagttatttactcattac
ccaccttgtgatggagatacggctgcaacatcgtttaccaagtactctggtaacaagggt
aaacaaggacaatggaaagatgattttttccggaaaccacagattagcagtgaggagatt
ctagaaaaagtggcatctttgagttctagacttaagaaggataaagctcttaaggagatc
actaagctgcggtcaaagcttcccatcacatcctttaaagacgcaattacatctgcagtg
gaatccaatcaggttattctcatttctggtgaaactggttgcgggaaaactactcaggtg
cctcaatatcttttagaccatatgtggtcaagcaaaagagaaacttgcaaaattgtttgc
acccaacctcgtcggatatccgccatgtcagtttctgaaagaatatcttgtgaaagaggt
gaaagcattggagaaaacattggttacaaggttcgactccaaagcaaaggtggaaggcac
tcatcagttgttttctgcacgaatggtattctcctgagggtgcttgtaggaaaaggctct
gttagcagtgtttccgacataactcacatcattgtggatgaaatccatgaaagagattgc
tattctgatttcatgttggcaattataagggatttgcttccatcaaatccccatctccgt
ctgattctcatgagtgctacgcttgatgctgagagattttctggatattttggaggttgc
ccggttgtccgtgtccctggattcacttatccagtgagaaccttatatttggaggatgtg
ctctctattctgaaatcaggtggagataatcatctaagctctaccaacttgagtatatca
gaccacaagcttgatttgacggatgaggataaacttgctttagatgaagcaatcatcttg
gcttggacaaatgacgagtttgatgccctcttagatctagtttcttctagaggaagtcat
gagatctacaattatcagcaccaatcaacctggctaacaccactaatggtctttgctgga
aagggcaggatcagtgatgtctgcatgctcctctcctttggtgcagattggagcttaaag
tctaaagatggtatgactgcattagaattggctgaagcagagaatcaactagaagctgct
caaataatcagggagcatgcagacaattcccagtctaattctcagcaaggacaacagtta
cttgataaatacatggcgacaatcaacccagagcaggtcgatgtgagtcttatacaacag
ttaatgaggaaaatatgtggcgattcagaagacggtgcgattcttgtttttctacctgga
tgggatgatataaataaaacaagacagagattacttgagaaccctttctttgcagatagt
gctaaattcgacattatatgtcttcactcaatggttccagcaggggaacagaagaaagtt
tttaatcgcccccctccaggttgtcgcaaaattgtgcttgcgacaaatattgctgaatca
gcagttaccattgatgatgtggtttatgtgatagatagtggccggatgaaggaaaagagc
tatgatccttataataatgtttcaactctccaatcttcttgggtatcaaaagcaaatgca
aaacagcgtcagggtcgagcaggccgctgccaacctggcatttgttatcatctctattct
agacttcgggcagcctctatgccagattttaaagttcctgaaatcaagaggatgccggta
gaagaactctgcttacaagttaagatacttgatccaaattgtaaaacaaatgatttcctt
cagaaactgttggacccgcctgttgatcaaagtattgcaaacgccttaagcatactacag
gatattggtgccctgacacctcaggaagagctgacagaacttggagagaaatttggtcat
ctcccagttcatcctctgattagcaaaatgctattcttcgctgtgttagtaaactgtctg
gatccagcacttactctggcatgtgcagcagactacaaggaaccatttacgatgcccatg
tcgcctgttgaaagacagaaagctgctgctgcaaaacttgaacttgcatcactttgtgga
ggtgacagtgatcaccttgcagttgttgctgcctttgagtgctggaaaaacgcaaaagga
agaggtctttcagcagagttttgctctcagtactttgtctctccaagtgctatgaagatg
ttggatcaaatgcgtagccaacttgagtcggaacttaaaagacatgggattattcctaac
gacatttcaagttgtagccaaaattcgcgtgatcccggtatactccgtgctgtgctagca
gtaggattgtatcctatggtgggaagattgtgcccagcttttggtaataatcgaagaact
atagtagagactgctagtggtgctaaagttcgtgtccattcgctgtcaaacaacttcaac
ttgtcgtctaaaaagtatgatgaatctttactcgttttcgatgagatcactcgtggagat
ggaggcatgcacataagaaactgtactgttgctcgtgatcttcctttgttacttatctca
acagagatagctgtggcccctacagggagcagtgattctgatgatagtaatgaagaagaa
gaagatgatgaagaagtagcagctaatactaatgaagaagtagcagctaatactaatgaa
gaaggaatggacatacataaagaagagagtaggcgtggagcgaaaatgatgtcttcacct
gaaaattcagtcaagttagtagttgatcgctggctgcctttcagaaccacagcccttgaa
gttgctcaaatgtacattttgcgggaacgactaatggcttctattttattcaaggtaaca
catccacgggaacatttgccacctcatctcggagcttctatgcatgcaatagctggtatt
ctctcatatgatggtcatgcaggactttcatgtccaccggagtctatggtaccaaaacat
tcaaggactgagatgtatgataccggtggatgggaagagaaaccaaactctttccttaac
tcactcttttggtctctgagtttgaaagagaacaagcatcctagtcacacgaataggaat
cagcagcataactacaacatggctccaacagaagctgcatcaatacctaggcagcaaaac
tataagcaaagaaatcccaaagcaaccaacaataccgattcgggtaagaagaaagagaag
atgtttgttaatcccaccaataggattaaccagcctgaagctgcttctacgggtaagcca
tcaaagcacaaatcagccaacagttcgggttcgagtaacaagaaagagaacatgccttct
gatcaggcctatgggaataagcaacataacacagttccaagagaagctgccgcaccaatg
gcgaagaatcaaagcagtaagaaaaccaagaccaggtcaggcaacaactcggattcgggt
aagaagaaagaacagtatattccaaagaggcaacgcgaagacaaagcagaacagaagtga
DBGET
integrated database retrieval system
