Arabidopsis thaliana (thale cress): AT2G35340
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Entry
AT2G35340 CDS
T00041
Symbol
MEE29
Name
(RefSeq) helicase domain-containing protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT2G35340 (MEE29)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT2G35340 (MEE29)
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AT2G35340 (MEE29)
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AT2G35340 (MEE29)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
AAA_30
PWI
nSTAND3
T2SSE
AAA_7
AAA_16
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
818101
NCBI-ProteinID:
NP_181077
TAIR:
AT2G35340
UniProt:
F4IJV4
LinkDB
All DBs
Position
2:14872265..14879739
Genome browser
AA seq
1044 aa
AA seq
DB search
MGSNDLNTWVSDKLMVLLGFSQTAVVQYLIAMAKQSKSPGELVRELVECGFSLSGDTRAF
AEEIYARAPRKTPGVNLYQQQEAEAAMLLKKQKTFSLLEADHDEDENNVKKQSASKTGKS
DKGQKRFRKKSEQLEDDDDEVVIVREDKRNVRRKVSEDEDDGTESEEERLRDQREREELE
QHLRERDTARTRKLTEPKMSKKEQEEFVRRDSAVDKGDIESLRKFSWQEYMKKRKQKKVL
ELKDDIEDEPYLFGDEKLTEREIREFRYKREIYELIKKSTQEEDNVGEYRMPDAYDQQGS
VDQEKRFAVSVQRYRDMGSAEKMNPFAEQEAWEDHQIENAALKFGAKNKEVSDNYEFVFE
DQIDFIKASVLAGDNYEDEMHAKPSQDSAGKSAFHMLQEDRKALPIYTYRDQLLNAVKDH
QVLIIVGETGSGKTTQIPQYLHEAGYTKLGKVGCTQPRRVAAMSVAARVAQEMGGKLGHE
VGYSIRFEDCTSEKTILKYMTDGMLLRELLGEPDLGSYSVIIVDEAHERTLRTDILFGLV
KDIARARPDLKLLISSATMDAEKFSDFFDQAPIFRFPGRRYPVDICFTTAPEADYMDAAI
TTVLTIHVKEPLGDVLVFLPGQEEIEAVEENLKHKIRGLGTKIRELIICPIYANLPSELQ
AKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLVTPISK
ASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLASVVLSLKSLGIHNLL
NFDFMDPPPSEALIKSLELLFALGALNQLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKC
SDEIISIAAMLSIGPSIFYRPKDKQVHADNAMKNFHVGNVGDHIAFLKIYNSWKETNYST
QWCYENYIQVRSMKRARDIRDQLEGLLERVEIDVSSNANELDSIRKSIVAGFFPHTAKLQ
KNGSYRTVKHPQTVHIHPASGLSQVLPRWVVYHQLVLTSKEYMRQVTELKPEWLIEIAPH
YYQLKDVEDATSKKMPKTSGRAVV
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggggagcaatgatttgaacacctgggtttcggacaagttgatggttctgctaggcttt
tcacaaactgctgtcgtgcagtatctaattgcaatggctaaacaatcaaaatcaccaggt
gaactcgtccgtgaattggtggaatgcgggttttctttgtccggtgatacccgcgcgttc
gcagaagaaatttatgctagagctccccggaaaacccctggagtgaatctctaccagcaa
caggaagcagaggcagcgatgctgttgaagaagcagaaaactttttcccttttagaggct
gatcatgatgaagatgaaaacaatgtgaagaaacaatctgcttcgaaaaccggaaagtca
gataaaggccaaaagaggttcaggaagaaaagtgagcaattggaagacgacgatgatgag
gtagtgattgttagagaggacaaaaggaatgttaggagaaaggtttccgaagacgaggat
gatggcactgagtctgaagaggaaagattacgtgaccaaagggagagagaagaactagag
cagcacctaagagaacgagatactgcacggacacgaaagctaaccgagccaaaaatgtca
aagaaagagcaagaagagtttgttcgaagagatagtgctgtagacaagggtgatattgaa
tccttaaggaaattctcatggcaagaatatatgaagaaaaggaaacagaagaaagtacta
gagctaaaggatgatatagaagatgaaccatacctttttggagatgaaaagctcactgaa
agagaaattcgtgaatttagatacaagagagaaatctatgagctcataaagaaaagtaca
caagaagaagataatgtaggagagtatagaatgccggatgcatatgatcaacagggaagt
gttgatcaggagaagaggtttgctgtttctgtacaacggtacagggacatgggttccgca
gagaaaatgaacccctttgcagagcaagaagcttgggaggaccatcagattgaaaacgca
gcattaaaatttggtgcaaagaataaggaggtctcagacaattacgagtttgtatttgaa
gaccaaatagacttcataaaggcatctgtgttggctggtgataattatgaagatgaaatg
catgctaaaccatctcaagattctgctgggaaatcggcttttcatatgcttcaggaggat
agaaaagctctgccaatttatacatatcgtgatcaacttcttaatgctgtgaaagatcat
caggttcttatcattgtgggggaaacgggttctggcaagactacacagataccccaatat
cttcacgaagctggttacacaaagcttggaaaggttggttgtacgcagcctcgaagagtt
gcggctatgagtgtggctgctcgtgttgctcaagagatgggtggtaaacttgggcatgag
gtcggctattccattcgatttgaggattgtacgtctgagaaaacaattctgaaatatatg
actgatggaatgcttttgcgtgagttgcttggtgagccagatctgggcagttacagtgtt
atcatcgtggatgaggcgcatgaaagaactttgcgcaccgacatactatttggattagtg
aaggatatagcacgggctcggcctgatctgaagttattgatatccagtgcaaccatggat
gcagagaagttttctgatttttttgaccaagcccctatcttcaggttcccaggaagaagg
tatcctgttgacatttgctttactactgcacctgaagctgattacatggacgcagcaata
actactgtgcttacgatacatgtgaaggagccacttggggatgttttggtcttcctccca
ggtcaagaggaaattgaagccgtagaagagaacttgaagcacaagataagaggtttgggt
acaaagatccgcgaactcattatatgcccaatttacgctaaccttccaagtgagctccaa
gcaaaaatatttgaaccaactcctgaaggggcacgaaaagtcgtgctagcaactaatatt
gctgaaacatcattgaccatcgatggtataaagtatgtcgttgatccaggctttagcaag
atgaaatcctataaccctagaacagggatggaatctttgcttgtaacgcctatctctaag
gcttcagcgactcaacgaactggtcgagctggaagaaccagtccagggaagtgttaccgc
ctgtacacggcgtttaattactacaatgacttggaggacaataccgtacctgaaatacaa
aggactaatcttgctagtgtggtgctttctttgaagagtcttggtattcataatctgctg
aactttgactttatggaccctccgccttctgaagctcttataaagtccttagagctgctc
tttgctctgggtgctctcaatcagcttggcgaattgactaaagctggtagacggatggca
gagtttcctcttgatccaatgttgtcgaagatgattgttgtttctgacaaatacaaatgc
tccgatgagattatatcaattgctgctatgttgtccatcgggccttctatcttttaccgc
cccaaggacaagcaagttcacgctgacaatgcaatgaagaattttcacgttggaaatgtc
ggtgatcacattgctttcctgaagatttacaattcgtggaaggaaacgaactactcaaca
caatggtgctacgagaactatattcaggttcggagtatgaaaagagccagagatatccgt
gatcagttggagggtcttctcgagagagttgaaatagacgttagctcaaacgcgaatgag
ttggattcaataagaaaatccattgtagctggtttctttccacacactgcgaagctacag
aagaatggatcatatcgaacagtgaagcatccccaaaccgtacacatacatccagcctct
ggcttatctcaggtattgccgagatgggttgtatatcatcaactagtccttacctctaag
gaatacatgcgacaggtaacagagttaaaacccgagtggttgattgagatagctccacac
tattatcagctcaaggacgttgaagatgctacatccaagaaaatgcccaaaaccagtggc
cgagctgtggtgtag
DBGET
integrated database retrieval system
