Arabidopsis thaliana (thale cress): AT2G39260
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Entry
AT2G39260 CDS
T00041
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03013
Nucleocytoplasmic transport
ath03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
AT2G39260
03015 mRNA surveillance pathway
AT2G39260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT2G39260
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
AT2G39260
mRNA cycle factors
P-body specific factors
AT2G39260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Glycos_transf_N
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
818511
NCBI-ProteinID:
NP_181459
TAIR:
AT2G39260
UniProt:
F4IUX6
A0A178W2N7
LinkDB
All DBs
Position
2:complement(16391924..16399812)
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AA seq
1181 aa
AA seq
DB search
MDHPEDESHSEKQDDEEALARLEEIKKSIEAKLTLRQNNLNPERPDSAYLRTLDSSIKRN
TAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQ
RYKEFSASLTQGLLKVFFPGKSAEDLEADKNSKAMKKRSTLKLLLELYYVGVIEDSNIFI
NIIKDLTSVEQLKDRDTTQTNLTLLTSFARQGRIFLGLPISGQDEDFFKGLDVTADQKKS
FKKAFNTYYDALADLLQSEHKLLLQMEKENAKLVNAKGELSEDSASSYEKLRKSYDHLYR
NISSLAEALDMQPPVMPEDGTTRLTAGDEASPSGTVKDTSVPEPIWDDEDTKTFYECLPD
LRAFVPAVLLGEAEPKSNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADSASMDDRSN
AEQPKEKEEVEKEKAKDTKKEKGKEKDSEKKMEHEKEKGKSLDVANFERLLQRLPGCVSR
DLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYYSRMVATLASCMKDIPSMLVQ
MLEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIVPAGLVFSCLKACLDEFTHHNIDV
ACNLLETCGRFLYRSPETTLRMTNMLDILMRLKNVKNLDPRQSTLVENAYYLCKPPERSA
RISKVRPPLHQYVRKLLFSDLDKDSIANVLKQLRKLPWSECEQYILKCFMKVHKGKYGQI
HLIASLTSGLSRHHDEFVVAVVDEVLEEIRVGLELNEYGAQQKRLAHMRFLGELYNYEHV
DSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRVRMVIILLETCGHYFDRGSSKKRLDQF
LIHFQRYILSKGHLPLDIEFDLQDLFANLRPNMTRYSTIDEVNAAILQLEEREHASSGDK
VSIERHSDTKPSNKSSSDVISSNGKSTAKDIRENGEAHGEESDSDSGSGSVVRDGQNEEL
DDGNHERGSESGDGDDYDDGDGPGSDDDKFRVRQKVVTVDLEEQADFDQELKALLQESME
QRKLELRGRPALNMTIPMSVFEGSGKDHHHFGRVVGENGEEVLDEENGEQREVQVKVLVK
RGNKQQTRQMLIPSDCALVQSTKQKEAAELEEKQDIKRLVLEYNERDEEEANGLGTQILN
WTSGGSRGSTRTGEGSGKSGGSRHRFYYHQGGGGSYHARRK
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggatcatccagaagatgaatcccacagcgagaaacaagacgacgaggaagctcttgct
cgtcttgaagagattaagaagtcaattgaagctaaactgactcttcgtcaaaacaatctc
aatcctgaacgacctgattcagcatatcttaggactctagattctagtatcaagcggaat
acagcagttattaagaagttaaagcagatcaatgaagagcagcgagaagggttgatggat
gatctgcgaggtgttaaccttagcaaattcgttagtgaagctgttactgccatttgtgag
gctaagctcaaaagctcagatatacaagcagctgttcagatttgctcgctacttcatcag
aggtataaagaattttctgccagtctaacacaagggctcttgaaagtcttctttcctgga
aaatctgccgaagatttagaagctgataaaaactcaaaggccatgaaaaagcgcagtacc
ctaaaacttcttctggagctctactatgttggagtaatagaagatagtaacatctttatc
aatattattaaggatcttaccagtgttgaacaactgaaagacagagatacgacccaaaca
aatctgacacttctcaccagttttgctcggcaaggaagaatttttctggggcttcctatc
tctggacaagacgaagattttttcaagggtctcgacgtcactgcagatcagaaaaagagt
tttaagaaagctttcaacacatattatgatgctcttgcagatctccttcagtctgagcac
aagttacttctccaaatggagaaagaaaatgcaaagctggtaaatgctaaaggagagctt
agtgaagacagtgcatcttcttatgaaaagctgaggaaatcatacgaccatctctatcga
aatatctcatctttggccgaagcacttgatatgcaacctcctgttatgccagaggatggt
acaactaggctcacagcaggggacgaagcttcaccctctggtactgtaaaagatacatct
gtcccggaacctatttgggacgacgaagacaccaagacattttacgagtgcttgcctgat
ctgagggcatttgttccagcagtattgttgggagaagcagagcctaaatcaaatgagcaa
tctgctaaggcaaaagagaaactctctgagtctagctctgaagttgttgaaaatcaacaa
acaaccgaagatacaacagaggtttctgctgattctgctagtatggatgatcgatcaaat
gctgagcagccaaaagagaaggaagaagtagaaaaggaaaaggctaaggatactaagaag
gaaaaaggaaaagagaaggatagtgagaaaaagatggaacatgagaaggagaaaggtaag
agccttgacgtggcaaacttcgaaagattgttacagcgacttccgggttgtgttagccgg
gatcttattgaccagttaacggtggaatattgttatttaaattccaagacaaacagaaaa
aaacttgtcaaagcgttatttaatgtccctaggacatctctggagttgctagcatactat
tcgcgtatggttgcaacactagcatcgtgcatgaaggacatcccgtctatgcttgtgcag
atgttggaagacgagtttaattctctggtccataaaaaggaccaaatgaatattgaaaca
aaaatccgaaacatcagatttattggagaactctgcaagtttaaaattgtacctgctggt
cttgtattcagttgtttgaaggcttgcttagatgaatttactcaccataacattgatgtt
gcttgcaatcttctggagacatgtggccgtttcctttatcggtctcctgaaaccacactc
aggatgacaaatatgctggacatattgatgcgcctgaaaaatgtcaagaatttagatcct
cgtcaaagcactcttgtggaaaatgcctactacttgtgtaaacctcctgaaagatcagca
agaatttctaaagttcgtccaccattgcatcagtatgttcgaaaattgctattctctgat
cttgataaagattccattgcaaacgtactgaagcaactgcggaagctgccatggagtgaa
tgtgagcaatacatcttaaagtgctttatgaaggttcacaagggaaagtatggtcagatt
cacttaattgcttccttgacttctggtttgagccgccatcatgatgagtttgtggtggct
gttgttgatgaggtactggaggagataagggttgggcttgagttgaatgaatatggggca
caacagaagcggctagcccatatgagattcttaggggagctgtacaactatgagcacgta
gattcatctgtgatattcgagacactttatttaactcttttatatggtcatgatacttca
gagcaagaggtgctggatccaccagaagattttttccgtgtcaggatggttatcattctt
ctggaaacctgtgggcactactttgatcgaggttcttcaaagaaaaggcttgatcaattt
ttaatacacttccagagatacatcctgagcaagggccaccttccactggatattgaattt
gacttgcaggatctatttgccaatttgagacctaatatgactcgttactcaaccattgat
gaggtcaatgccgctatacttcagctggaagagcgtgaacatgcttcttcaggagacaaa
gtcagtatagaaagacactcagatacaaagccttcaaacaagtcgtcttctgatgttatc
tcttctaacgggaaaagtactgccaaagatattagagagaatggagaagctcacggagaa
gaaagcgacagcgattctggtagtggctccgtggttcgtgatggacagaacgaagagttg
gatgatggaaatcatgagcggggatctgagagtggtgatggggatgattatgatgatggc
gatggacctggatctgatgatgataaatttcgtgtaaggcaaaaggtggtaaccgtagat
cttgaggaacaagcggacttcgatcaagaactgaaggccttacttcaggagagcatggag
caaaggaagctagaattacgaggtagaccggcattgaacatgacaataccgatgagtgtt
tttgaaggatctggaaaagatcatcatcattttgggcgggtagtaggtgaaaacggtgaa
gaagtgttggatgaagagaatggagagcaaagagaggttcaagtgaaggtcctagtgaag
agaggaaacaaacaacaaacaaggcaaatgctaatcccgagtgattgtgctctagtgcag
agcacaaaacagaaagaagctgcagaattggaagagaaacaagacataaagaggttagta
ctcgagtacaatgagagggatgaagaggaagcaaatgggttaggaacacagatattgaat
tggacttctggaggaagcagaggatccactcgaaccggggaaggcagtgggaagagtggt
gggtctcgtcaccggttttattatcatcaaggaggtggtggttcgtatcatgcccgacga
aagtaa
DBGET
integrated database retrieval system
