Arabidopsis thaliana (thale cress): AT2G40650
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Entry
AT2G40650 CDS
T00041
Name
(RefSeq) PRP38 family protein
KO
K12849
pre-mRNA-splicing factor 38A
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT2G40650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT2G40650
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AT2G40650
Complex C
U4/U6.U5 tri-SnRNP related factors
AT2G40650
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
818660
NCBI-ProteinID:
NP_565937
TAIR:
AT2G40650
UniProt:
Q8LB54
A0A178VVG9
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Position
2:complement(16963286..16965798)
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AA seq
355 aa
AA seq
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MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT
FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL
EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR
KSVLEDDFEEEEEKEENEGIADGSEDEMDQRRKSPERERERDRDRRRDSHRHRDRDYDRD
YDMDRDHDRDYERERGHGRDRDRERDRDHYRERDRDRERGRDRERDRRDRARRRSRSRSR
DRKRHETDDVRDREEPKKKKEKKEKMKEDGTDHPNPEIAEMNRLRASLGMKPLRD
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacagaacagatccgttggcaaagaatataagaggaacgaatccgcagaatctg
gtagagaagattgtgcgaacgaagatttatcagcacaccttttggaaggagcagtgcttt
ggtctcacggcggagacattggtggacaaagctatggagctcgaccatctaggtggtacc
tttggtggtagccgcaagcctactccgttcctttgcctcatattgaagatgcttcaaatc
cagcctgagaaggaaattgtcgtggagttcataaaaaatgatgactacaaatatgttcgt
attcttggtgcgttctatctgcgtctcactgggactgatgttgatgtctatcgctacctc
gaacctctctacaatgactaccggaaagtgagacaaaagttatctgatgggaagttttcg
ctgacacatgtggacgaagtcattgaggaacttctaaccaaggattattcttgtgatatt
gcaatgccacgtttgaagaaaaggtggacgcttgaacagaatggtttattagagccaagg
aaaagtgttttggaagacgactttgaagaagaggaagaaaaggaggagaatgaagggatt
gctgatggatctgaagatgagatggatcagcgccgtaagagtcctgaaagagaaagagaa
agagacagagacaggagacgcgacagtcatagacacagggatcgtgattatgacagagac
tatgatatggatcgagatcatgacagagactatgaaagagaacgtgggcatggtcgagac
cgggatagggagagagacagggatcactatagagagcgagatagggacagggaaagaggc
agagatagagaacgagacagaagagacagggcaaggcgcagaagtagaagcaggagtagg
gatcgtaagagacatgaaactgatgatgtgcgggatcgggaagaacctaagaaaaagaaa
gaaaagaaggagaagatgaaggaagatggaaccgatcatccaaatcctgaaattgcagag
atgaatagactgagagcatcactgggaatgaaacccctcagggactga
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