Arabidopsis thaliana (thale cress): AT2G40770
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Entry
AT2G40770 CDS
T00041
Name
(RefSeq) RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ath04121
]
AT2G40770
Enzymes [BR:
ath01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
AT2G40770
Ubiquitin system [BR:
ath04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
AT2G40770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
Helicase_C
SHPRH_helical-2nd
zf-C3HC4
zf-RING_UBOX
PHD
RING_XB3-XBAT31
PHD_5
zf-RING_2
SVIP
TPR_1
TPR_10
TPR_2
RNPP_C
TPR_12
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
818674
NCBI-ProteinID:
NP_001318395
TAIR:
AT2G40770
UniProt:
F4II36
LinkDB
All DBs
Position
2:complement(17013269..17021606)
Genome browser
AA seq
1664 aa
AA seq
DB search
MGRRKQSKPQRAVGLITPTGSESDRNQLPGDEAEGSGDKNVEDIDKPYYVNICLSSRVSE
QQQNFDLAEVVLTNFSVRERVGSSSTFTKPIEVDHDLDCSLRFRLCNVTNFVDRIKLGHW
PVLSSSDITLELVDNKVSDDEVGSVIWSASFDGPGEGVSGLAHLASIKFLTLRLMPGNEG
LLSPRVRVEMLQQAFDACDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYGTRFNVKDI
ESSVVTEDETLDSSKQSSFDAAAFYEAIKPSKTDAMLGDDIADLLPELRPYQRRAAYWMV
QRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTPEYFSPRIQGGIL
ADEMGLGKTVELLACIFSHRKPAEDEISVSNGSSVTDVLNAGLRRLKRERVECICGAVSE
SHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQKKSKKDATEIIVREGE
YICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASL
SEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTPLTRIFW
WRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVS
RWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQEECVSWLKFSAIE
EHFYSRQHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCH
PQVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLIVALNGIAAIAMLKQEFSEA
VSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKSYGGKLSASGRPETKIDVKD
DDHHRASKRQRINELESLTHDSSETVHQREAIAPDNGLKKDGECHEECKTLDIVCDTLKV
KYLSAFNSKLSAAQHEFKKSYNQVSESLSNMGKQRSVWWLDALQLTEQNKDFSSELTRKI
EEALHGNLNNSSSSRESSRFRTIHGMKLHLQTCMDMLERSRKKVIDRILEIDQTMEKPKL
EDIERISNCKYCNKNSDGPPCIHCELDELFQEYEARLFRLNKSRRGVMEIAAAEETVHLQ
KKRDARNLFLFGLSSRSKDLNASRGDDEEPTKRNAGDIVVLSKSPSETEIVLGVIRNHCK
THLDRESKLAATKHLHTLEVMRKEYVHARVLARDQAQLLRAYDEINMSTMRLQLRESEDD
TSIYALGRDELDVASVLNTNDKFMAQSSLLSIKGKLRYLKGLMKSKQKQESESPDLSSPI
HETVDASDPAEQESENLLKRDEACPICHEILRNQKMVFQCGHSTCCNCFFAMTERKSVQE
TLQKWVMCPICRQHTDVRNIAYADDRRNSSSSDQDHKDSEASLVVQGSYGTKIEAVTRRI
LWIKSSDPQTKVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQ
KTNSHQKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEK
PTLVHRFLVSGTVEESIYKLNRNKNTNLSSFSSRNTKNQDQQFLTLKDLESLFASPTAET
AEMEQNPGERQENLRDLPPSVAAALAAERRMKESNASSSTTNAS
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggagaaagcaatccaagccccagcgtgcagtgggtttgatcactccaactggt
tctgaatccgatagaaatcaattacccggcgacgaagctgagggttcaggggacaagaat
gttgaagatatcgataagccgtattatgtgaacatatgtttaagtagtcgagtttcggag
cagcagcagaactttgatttagctgaagttgttctaacgaattttagtgtaagagaacgt
gtaggaagtagtagtacattcacaaaacctattgaggttgatcatgatctggattgctcg
ttacggtttcggctttgcaatgtgactaattttgttgatcggattaagcttggtcactgg
ccggttttgtcttcgagtgatataactttggaattggttgataataaggtgtctgatgat
gaggttgggtcagtgatttggtctgcaagttttgatggtccaggtgaaggggtttcgggt
cttgctcatttggcaagtataaagtttttgactttaaggctcatgcctggtaatgaggga
ttgttgtctcctagagttagagttgagatgcttcagcaggcttttgatgcatgtgattct
cttcttgagaatacaaggcagatttggaaaaagagtatgattcatgtcatgtcttggttg
aggccagaggtaatgacatcagaggctaggtatgggacaagattcaacgtcaaggatatt
gagtcatcagttgtgacggaagatgaaactttggactctagtaagcagtctagttttgat
gctgctgctttttatgaagccataaagccatcaaagacggatgcaatgcttggagatgac
atagctgatttgctcccagaacttaggccgtaccaacgacgggcagcttattggatggtt
cagcgagagagaggcgatccaataacgttgggagacaaggaagacaaccaattcatttca
cctttgtctatctccgtgggattccttgactctgctacaaaaatgttcttgaacccattc
agtgggaatatctcattgacaccagagtatttttcacctcgaattcagggcggtatcctt
gctgatgaaatgggattgggaaaaacggtggaactacttgcttgtatcttttctcatcga
aaaccagcggaggatgaaatttctgtgtctaatggttcatcagttactgatgttttgaac
gctggcttgagaagattgaaaagagaacgtgttgagtgcatatgtggagctgtcagtgaa
agtcacaaatacaaaggagtttgggtacagtgtgacctttgtgatgcttggcagcatgcc
gactgtgtaggttattcacctaaagggaaaggtaagaaggatagtcaacatattgatgaa
aaagcatctcaaaagaagagcaaaaaggatgcaacggaaattattgtcagagaaggtgaa
tatatttgccaaatgtgctctgaacttctacaagtcactgcctctcccatctctacgggt
gccactcttattgtctgtccagctcctatattaccgcaatggcattccgagattacacgc
catacacgcttgggatctctcataacatgtatctatgaaggtgtgaggaacgcctcactt
tctgaagaacctatgattgacattactgaacttctcaatgcggacattgttttaactacg
tatgatgtccttaaagaggacttgacacatgacttcgacaggcatgatggtgaccggcac
tgtcttagattccagaaaaggtaccctgttattccgactccactcaccagaatattttgg
tggaggatttgtttggatgaggcccagatggtggagagcaatgcagctgctgcaacagag
atggcgttgagattatacaccaaacaccgttggtgtatcaccggaactcctatacaacgc
aaacttgatgacttatttggactattgaagtttcttaaagcaaatcctttcgatgtttca
agatggtggattgaagttataagagacccatatgagaggcgagacacaaaggccatggaa
tttacgcataagtttttcaaacaagttatgtggcgttcttcaaaagtccatgtggctgat
gagttgcaacttccacctcaagaggaatgcgtctcgtggcttaaattttccgcaattgaa
gaacacttttacagtagacagcatgacacttgtgtgagttatgctcgtgaagttatagaa
actttgaaacgtgatattctcaaaagaggtcatacttcttctgataatcctttagtcact
catgctgaagctgcaaaactgttgaactcgctcttgaaattgcgccaagcttgctgccac
cctcaagtaggaagttcaggtttacgctctttgcaacaaagtccaatgaccatggaagaa
attttaatggtccttgtgaaaaagacccagagcgagggagaagaagctcttagagtgtta
attgttgcattaaatgggattgctgctattgccatgcttaagcaagaattttctgaagct
gtgtccttatacaaggaagcattaagtataactgaagaacacgccgaggattttcgtctt
gatccattgttaaatattcacattcttcacaatttagctgagatactaccaatggccaaa
agctacggtggaaaactttctgcatcaggaaggcctgaaacaaaaatagatgtaaaagat
gatgatcatcatcgtgcatcgaagaggcaaaggatcaatgagctcgagagtttaactcat
gattcttcagaaactgtacatcagcgggaagctattgctccagacaatggtttaaagaag
gatggagagtgtcatgaagaatgcaaaactctggatatagtttgtgacacactgaaggtt
aagtatttatccgcattcaactcaaagctttctgcagcacagcacgaattcaaaaaatca
tacaatcaggtttctgagtcgttgagcaatatggggaaacaacgttcagtttggtggttg
gatgccctgcaacttactgaacagaataaagacttctctagcgagttgacaaggaagatt
gaagaggccctccatggaaacttaaacaattcaagctcctccagagagagttctcgattt
agaactatacatggcatgaaacttcatctgcagacgtgtatggatatgctggagagatct
agaaagaaagtgatagataggattctagaaattgatcagactatggagaaaccaaagttg
gaggatattgagcgtattagcaactgcaagtattgcaataagaatagtgatggccccccg
tgtattcattgcgagctagatgaactattccaggaatatgaggctaggcttttccgtctt
aacaaatctcgcaggggagtaatggaaattgcggctgctgaagagacggtacatttgcag
aagaagagagatgctcgtaatctttttttatttggtttatcatcaagaagcaaggatcta
aatgcatcacgtggtgatgacgaggagccaaccaaaagaaatgctggtgacattgtggtt
ctttcaaaatctccatctgagacggaaatagttcttggagtgataagaaaccattgcaaa
actcatttagatagggaaagcaaattggcagctacaaaacatttgcatacccttgaggtg
atgcgaaaggaatatgtacatgcaagggtcttagctagggatcaagctcaactcctacgt
gcctatgatgagattaacatgtcaacaatgagactacagcttagagaatcggaagatgac
acatcgatctatgctttgggccgggacgagttagatgttgctagtgtgctgaacacaaat
gacaaatttatggctcaatcctcgttgcttagtataaaagggaaacttcgttatttgaag
ggtttgatgaaatccaaacagaaacaagaatccgagagtccagatctttcctcaccaata
catgaaacagtcgatgcttcggatcctgctgaacaggaaagcgaaaacctgcttaagaga
gatgaagcatgcccgatttgtcatgaaattctaaggaatcagaagatggttttccagtgc
gggcattccacttgctgtaactgcttttttgctatgactgagcgcaaatcagttcaagaa
acgctgcaaaagtgggtgatgtgtccaatatgcaggcagcatacagatgttagaaatatt
gcatatgctgatgatagaagaaacagttcttcgtcagatcaagatcacaaagacagtgaa
gcatcattggtggttcaaggttcatatggaacaaagattgaagctgttactagaagaatc
ttatggatcaagtcaagtgacccacaaacgaaggttcttgttttctccagctggaacgat
gttcttgatgtgttggaacatgccttcgctgcaaatagcatcacctgcatccggatgaaa
gggggcaggaaatcacagacagccattagcaaattcaagggatctgagaaagaaacccaa
aagacaaactcccatcaaaaagaggaaaaatcgattcaagtgttattgcttttggtgcag
catggtgccaacggtcttaatcttctagaagcacagcatgttattctggtggagccactt
ctaaatccagctgcggaagcgcaagctgttgggcgtgttcaccgaattggacaagagaag
cctactctagttcatcggtttctggtatcgggcacagtggaagagagcatctacaaactg
aacaggaataagaatacaaacttaagttcatttagcagcaggaatacaaagaatcaagat
caacagttcttgacactaaaagatcttgaatctctatttgcttcaccaacagcagaaaca
gcagagatggaacaaaacccaggagagagacaggagaatctgagagatctaccaccctca
gtcgctgcagcattagcagccgagaggagaatgaaggaaagtaatgcatcctcatcaact
acaaacgcatcatga
DBGET
integrated database retrieval system
