Arabidopsis thaliana (thale cress): AT2G41500
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Entry
AT2G41500 CDS
T00041
Symbol
LIS
Name
(RefSeq) WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT2G41500 (LIS)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT2G41500 (LIS)
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
AT2G41500 (LIS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
PRP4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
WD_LRWD1
Beta-prop_SPT8
WD40_like
Motif
Other DBs
NCBI-GeneID:
818748
NCBI-ProteinID:
NP_001324961
TAIR:
AT2G41500
UniProt:
O22212
A0A178VMW2
LinkDB
All DBs
Position
2:complement(17304130..17307426)
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AA seq
554 aa
AA seq
DB search
MEPNKDDNVSLAATAQISAPPVLQDASSLPGFSAIPPVVPPSFPPPMAPIPMMPHPPVAR
PPTFRPPVSQNGGVKTSDSDSESDDEHIEISEESKQVRERQEKALQDLLVKRRAAAMAVP
TNDKAVRDRLRRLGEPITLFGEQEMERRARLTQLLTRYDINGQLDKLVKDHEEDVTPKEE
VDDEVLEYPFFTEGPKELREARIEIAKFSVKRAAVRIQRAKRRRDDPDEDMDAETKWALK
HAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKER
ATDVVFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSYD
KTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQ
GHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYF
LATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGN
DDEDEEKETMDIDL
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaacaaggatgataatgtttcattagcagcaacagctcaaatttcagcacct
ccagttctacaagatgcctcgtctctgccaggtttctctgccattccacctgtggttcct
ccttcttttcccccaccaatggctccaatacctatgatgccacatcctccagttgcccgc
ccacctacttttaggccacctgtttcacaaaatggtggagtgaaaaccagtgactcggat
tcggaatcagatgatgaacatattgagatatctgaagagagtaagcaggtcagagaaaga
caggaaaaggcattgcaagatttgttggtaaagcgtcgtgctgctgctatggcagttcca
acaaatgacaaagctgttagggaccgacttagacgacttggggagcccattactctattt
ggagaacaggaaatggagagacgagctaggctgactcagctgttgactaggtatgatatc
aatgggcaattggataaactggttaaagatcacgaagaagatgtgactccaaaagaggaa
gtagatgatgaagttcttgaataccccttttttaccgagggtccaaaggaacttagagag
gctagaatagaaattgccaagttttctgtcaagagagctgctgtcaggattcagcgtgca
aagcggcggagggatgatccagatgaagatatggatgcagagactaagtgggctttaaag
catgctaaacacatggcccttgattgcagtaattttggagatgatcgtcctcttaccggc
tgctccttctcacgcgatggaaagatacttgccacatgttctctgagtggagttactaaa
ttgtgggagatgcctcaagttacaaacacgattgctgtcttgaaggatcacaaagaacgt
gcaactgatgtagtgttctccccagtggatgattgtctagcgactgcttctgctgatcga
actgcaaagctgtggaaaactgatggaacactcctacaaacgtttgaaggtcatttggat
cgtctggcacgtgttgctttccacccatcagggaaatacctgggaactacaagctatgac
aagacgtggagattgtgggatataaacacaggagcagaactgcttttgcaagaaggccat
agccgcagtgtctacggaattgcatttcaacaagatggagcattagcagcttcttgtggg
cttgattcactcgcacgagtttgggatctccgcactggtaggagtattcttgtcttccaa
ggacacatcaaaccggttttctccgtgaatttctctcctaatggttatcacttggcatct
ggtggggaggataatcaatgccgtatttgggatctaagaatgagaaagtcattgtacatt
ataccagctcatgctaaccttgtgtctcaagtgaagtatgagccacaagaaggctacttt
ctggccactgcctcatacgacatgaaagtcaatatatggtcaggaagagatttctcgctc
gttaaaagcttagcagggcatgagtcaaaagtcgcctctctagatatcacagcagatagc
tcgtgtatcgctactgtatcacatgatcgcaccatcaagctatggacaagcagtggaaat
gatgatgaagacgaagagaaagaaacaatggacatagatctctag
DBGET
integrated database retrieval system
