Arabidopsis thaliana (thale cress): AT2G41620
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Entry
AT2G41620 CDS
T00041
Name
(RefSeq) Nucleoporin interacting component (Nup93/Nic96-like) family protein
KO
K14309
nuclear pore complex protein Nup93
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
AT2G41620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT2G41620
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
AT2G41620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
Motif
Other DBs
NCBI-GeneID:
818760
NCBI-ProteinID:
NP_565951
TAIR:
AT2G41620
UniProt:
O22224
A0A178VRC1
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Position
2:complement(17347304..17355103)
Genome browser
AA seq
861 aa
AA seq
DB search
MANDQEMSGWTDLLHSSSKLLEQAAPSSQFPPLQRNLDQLEALSKKLKAKTLRNEAPSQS
IAATRLLAREGINAEQLARDLKSFELKTTFEDVFPAEATSVEEYLQQVHEMAMVSAIQEA
QKDNVRSFNDYMMKVLEEDWRKEKRDFLQSLSRISMLPKTNMIDTSREAHAGQLVPVGSS
PRVSSTPGKELVALANIPIHEKKAYVYGEVVKKLNTSRERGMPFRPAMCFKDAYDTLGAE
VTRGKSVNMQKIWQLVQAITGEDSAVRQGVSKRMALAIGARHHLQHGHEKFIMDTIQTHP
TQAALGGSVGNLQRIRAFLRIRLRDYGVLDFDSTDARRQPPVDTTWQQIYFCLRTGYYEE
AREIARSTRSSQQFAPLLTEWITTDGMVAAESAAIASEECEKMLRMGDRLGRTAYDKKKL
LLYTIISGSRRQIERILRDLSTLFNTIEDFLWFKLSCIRDVTGGSSSVVLNDGLAPYSLD
DLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSVQLLPAIMHLSKEAGDGGYNIDAVHIAIS
LVDHSVLSEGSGTGHKLSVMDSNAEASSMIRQYGSMFLHHGDLQMTVEYYAQAAATVGGG
QLAWSGRSNVDQQRQRNLMLKQLLTEILLRERGIYFLLGARGSGEEGQLGRFFPDSRLRQ
QFLVEAAHQCQEAGLYDKSIELQKRVGAFSAALETINKCLSEAICSLARGRLDGESRTSG
LILAGNDILETYKYYPEVSLQERERVMEQETILRELEAILSIHKLGRLGNHLDALREIAK
LPFLHLDPRMPDATADVFQSASPYFQTCVPDLLKVALTCLDNVPDTDGSIRAMRSKIAGF
LASNTHRNWPRDLYEKVARSF
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgaccaagagatgagtggttggactgatcttctccattcttcgtcgaagctt
ctggagcaagctgctccttcttctcagtttcctcctcttcagagaaatttagatcagttg
gaagcgttatcgaagaagctcaaggctaaaaccctgaggaacgaagctccttctcagtct
attgctgccactagactactcgcacgggagggaatcaatgcagagcaactagctcgtgat
cttaaatctttcgagctcaagacaacatttgaggatgtgttccctgctgaggcgacgagc
gttgaagaatacctgcaacaggttcatgaaatggctatggtatcagctattcaggaagcc
caaaaggataatgttcgaagctttaatgactacatgatgaaagtgttggaggaggattgg
agaaaagaaaaacgtgacttccttcagagcctcagcagaatatcaatgctacctaaaaca
aatatgattgatacaagcagagaggctcatgctggtcaactagtgccggtgggttcgagt
cctcgagtatcctcaactccaggcaaagaactcgtggctctggctaacatacccattcat
gagaaaaaagcatatgtctatggggaggttgtgaagaaacttaacacttcaagagaacga
ggcatgccatttagacctgctatgtgttttaaggacgcttatgatactcttggtgctgag
gtaactcgtggaaaatcagtcaacatgcagaaaatatggcagcttgttcaggcaataaca
ggtgaagattcagcagttcgacagggtgtttcgaagaggatggccctcgcgataggtgca
agacatcatttacaacatgggcatgagaaatttataatggacacaattcaaactcaccct
acacaggctgctcttggtggatctgttggaaatttgcaaagaattcgtgctttccttcgg
attcgtttgagagactatggagttttagattttgattcaactgatgctcgtaggcagcct
cctgttgatactacttggcaacagatatatttttgcttgcgaactgggtattatgaggag
gctagggaaattgctcggtcaacacggtcatctcagcaatttgcaccactgcttacagag
tggattaccacagatggtatggtggctgcagagtctgcagctattgcatcagaagaatgt
gagaaaatgctaaggatgggcgatcggttgggtcgaacagcttatgacaagaaaaaactc
ctactctacactatcatttctggttcccgtaggcaaattgagcgcatactgagggatcta
tctacactctttaacacaattgaagatttcttatggttcaaattgtcatgcataagagac
gtcactggtggatcctcatctgtggtcctgaatgatggccttgcgccatacagtttggat
gatcttcaggcttatctcaataaatttgagccttcatactacacaaagaatggaaaagac
cccttggtatatccatatgttttgcttctcagtgttcagttgctaccggccatcatgcac
ttatccaaagaagcaggagacggagggtataatattgatgctgttcatatagctatttct
ttggtggatcattccgttttatctgaaggctctgggactggccacaaactaagtgtgatg
gattctaatgctgaggcatctagcatgattaggcaatatgggtcaatgtttttgcatcac
ggagatctccaaatgacggtagagtattatgcacaagctgctgctactgtaggtggggga
caattagcttggtctggaagaagtaatgtggatcaacaaaggcagagaaacctaatgctg
aagcagctactgactgagattctgcttcgagaaagaggtatttactttttgcttggagca
agaggttctggtgaagaaggtcagcttggaagatttttccctgattctagattgagacaa
cagttcttggtcgaagctgcacatcaatgtcaagaagctggattatatgacaaatccata
gagttacagaagagggtgggtgcattttccgctgccttggagactataaacaagtgtcta
tccgaagccatctgttctcttgcccgtggaaggttggatggtgaaagtagaacatcaggg
cttattctcgcagggaacgatattcttgagacttacaaatattaccctgaagttagtctc
caggaaagagagcgagtgatggaacaagaaaccatactaagagagcttgaggcaatacta
tcgatccacaagttgggtagattaggcaatcatctggatgctttgagagaaattgcaaaa
cttccatttcttcatcttgatccaagaatgcccgatgcaaccgctgatgtgttccagagc
gcatctccttacttccagacttgtgtcccggacctgctcaaagttgctctaacgtgtctg
gacaatgtacctgacactgatgggtcgatccgtgccatgagatccaagattgctgggttt
cttgcaagcaacacgcaccggaactggcctcgtgacttgtacgagaaggtggctcgaagc
ttttga
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