Arabidopsis thaliana (thale cress): AT2G42330
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Entry
AT2G42330 CDS
T00041
Name
(RefSeq) GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein
KO
K13103
tuftelin-interacting protein 11
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT2G42330
Spliceosome [BR:
ath03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
AT2G42330
Other components
Complex C specific factors
AT2G42330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GCFC
G-patch
TIP_N
G-patch_2
Toprim_C_rpt
Motif
Other DBs
NCBI-GeneID:
818834
NCBI-ProteinID:
NP_001325005
TAIR:
AT2G42330
UniProt:
Q9SLC6
A0A178VSI9
LinkDB
All DBs
Position
2:complement(17630729..17634370)
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AA seq
752 aa
AA seq
DB search
MGDEGKKEKRRQTKEDAVYGFVFESDSNSDDSGGSRRKKRRKTKPVKFSSAGNIDQVLKQ
NRGNCKIDENDDTILPIALGKKIADKAHVREKNNKKENFEKFSGGIGMKLLEKMGYKGRG
LGKNQQGIVAPIEVQLRPKNMGMGYNDFKEKNAPLFPCLNKVEEKKKSVVVTVSENHGDG
RRDLWKKKNVRKEVYITAEEFLGKKQEEGFGCDQLIIDKRGPQDRVVNSLRNLYAEEKAT
DANVQQPELQHNLRFIVKSLEHGILKTDKDLRNEKGLALSLQQEKEKFKMGVKKQKTLFD
NLGYVAEEIDRIEVEIASGNLTLDSLANRFKDLRSSYPDDYKCCNLSCIASSLALPLFIR
MFQGWDPLSDAEHGIEAISSWKMLLEVEDNQSISTPYSQLVSEVILPAVRVSGINTWEPR
DPEPMLRLLETWEKMLPSLIFETILTTVVLPKLSIAIESWEPRLETVPIHFWVHPWLPVL
GQKLESAYQIIRMKFGNLLDAWHPSDVSVHTILSPWKTVFDAASWEQLMRRYIVPKLQVA
LQEFQINPADQNLDEFNLVMGWVSSVPIHLMTDLMERFFFPKWLDVLYHWLCSEPKFDEI
MKWFLGWKGTFPQELSANRRIEIQFKRGLDMAREAVERMEMSQPGARENISYHKAQEQRQ
SEGRAKVQAQVDDPEELSFKEAVELFAQEKELLLKPKPHRMHNGLQIYRFGNVSVLLDSA
NSKLLAQEEGRWFPVDLDSLLKMHYSAVTGKQ
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacgaagggaagaaggagaagaggagacagactaaggaggacgctgtttatgga
ttcgtcttcgaaagtgattcgaactctgatgattccggcggctctcggaggaagaagagg
cgtaaaaccaaacctgtcaaattttcttctgctggtaacattgatcaagtactgaaacag
aatcggggaaactgtaaaattgatgagaatgatgatactattttacctattgcattgggt
aagaaaatagctgacaaggcacatgtgagagagaagaataataaaaaggaaaactttgaa
aagtttagtggagggattggtatgaaattgcttgaaaaaatgggatataaaggaagaggg
cttggaaagaatcagcagggaattgtagctcctattgaagtacaattgagaccgaagaat
atgggtatgggttacaatgatttcaaggagaagaatgcacctttgtttccttgtttaaac
aaggttgaggagaagaagaagagtgttgtggtcactgttagtgagaatcatggtgatgga
aggagggatctttggaaaaagaagaatgtgaggaaggaagtttatattaccgcggaagag
tttcttgggaagaaacaggaagagggttttggttgtgatcagcttattattgataagcga
ggaccacaagatcgagttgttaacagtttgagaaatttatacgcagaggagaaagcaaca
gatgctaatgttcaacagccagagttacagcataacttgcggtttattgttaaatcactc
gagcatgggattctgaagactgataaggatttgaggaacgagaaaggattagccttgagc
ttgcagcaagagaaggagaaatttaagatgggggtaaagaaacagaaaacgctgtttgac
aacttgggatatgttgcagaggaaatcgatcgaattgaggtggagattgcgtctgggaat
ttaaccttggattcacttgccaatcgtttcaaggacttgcgttcaagctatcctgatgac
tataagtgttgtaacttgtcatgcattgcttcctcactggccttgcctctctttatcagg
atgtttcagggttgggaccctcttagtgatgcagagcatggtatcgaggctatatcttcc
tggaaaatgctgctggaagttgaggacaatcaaagtatctcgacgccttatagccaactt
gtctcagaggtaattttacctgctgtgcgagtatcaggcatcaatacttgggaacctaga
gatcctgagccaatgttgagattgctagagacatgggagaaaatgctaccctcacttatt
ttcgaaacgattttgaccacagtagtgctgccaaaattgtcaatcgctattgaatcttgg
gaaccacgtttggaaactgttcccatccacttttgggtacatccgtggctgccagtactt
ggtcagaagttggaaagtgcgtatcagatcattcgaatgaaattcggtaaccttcttgat
gcttggcatcctagtgatgtgtctgtccacactatcctttccccttggaagactgttttt
gatgctgcaagctgggagcagcttatgcgtcgttacatagttcctaaattacaggtggcc
ttgcaagagttccagataaacccagcagatcagaacttagacgagttcaatttggttatg
gggtgggtatcttcagtacccattcatctaatgactgatttgatggagagattctttttc
cccaagtggctggatgttttatatcactggttgtgttcagaaccaaagttcgatgagata
atgaaatggtttttgggttggaaaggaacattcccacaggagctttctgcaaacaggagg
atcgaaatccagttcaagcgtggtctagatatggcgagggaagcagttgaacggatggaa
atgtctcagccaggggcaagggaaaacataagttaccacaaggcacaagagcagaggcag
tctgagggtcgtgctaaggttcaggctcaggtggatgacccggaggagctgagttttaaa
gaagcagtagaattgtttgcgcaggagaaggagttgctgttgaaacctaaacctcataga
atgcacaacggtcttcagatctataggttcgggaacgtgagtgtgttactagactcagca
aactctaagttgttggcccaggaagaaggacgttggtttcctgttgatcttgacagcttg
cttaagatgcactatagtgctgttactggaaaacaatga
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