Arabidopsis thaliana (thale cress): AT2G42520
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Entry
AT2G42520 CDS
T00041
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolases superfamily protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT2G42520
03041 Spliceosome [BR:
ath03041
]
AT2G42520
03036 Chromosome and associated proteins [BR:
ath03036
]
AT2G42520
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT2G42520
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AT2G42520
mRNA cycle factors
Common to processing body (P body) and stress granule
AT2G42520
Spliceosome [BR:
ath03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
AT2G42520
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
AT2G42520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NPF
Motif
Other DBs
NCBI-GeneID:
818852
NCBI-ProteinID:
NP_001324554
TAIR:
AT2G42520
UniProt:
Q84W89
A0A5S9X6E0
LinkDB
All DBs
Position
2:17704741..17709060
Genome browser
AA seq
633 aa
AA seq
DB search
MSASWADVADSENTGSGSSNQNSHPSRPAYVPPHLRNRPAASEPVAPLPANDRVGYGGPP
SGSRWAPGGSGVGVGGGGGYRADAGRPGSGSGYGGRGGGGWNNRSGGWDRREREVNPFEN
DDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYV
KPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLA
VILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLND
LLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREI
QRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQAL
TLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAAR
GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEA
NQEVPEWLTRYASRSSFGGGKNRRSGGRFGGRDFRREGSFGSGRGGYGGGGGGYGGGGGY
GGGGGYGGGGGYGGGYGGASSGGYGGEPPSAWD
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcatcatgggctgatgtagctgactcagagaacacgggttctgggtcttctaat
cagaattctcatccttcacgacctgcttatgttcctccacatctaaggaacaggccagca
gcttctgagcctgttgctccattgccagctaatgatcgtgtaggttatggtggtccacct
tctggctctcgatgggctcctggtggtagtggtgttggtgttggaggtggtggtggttat
agggctgatgcaggtcgtcctggctctggctctggctatggtggacgaggaggtggtggt
tggaacaacagaagcggagggtgggaccgtagggaacgtgaagtaaacccctttgaaaat
gatgattccgaaccagaaccagcttttactgagcaggataatacggttattaattttgat
gcctatgaagatattccgattgagaccagtggggataatgtgcctcctcctgttaacaca
ttcgcagagatagatctcggggaggcattgaatctaaatatccgtagatgcaaatatgtt
aagccaacacctgttcagcgtcatgcgattccgatattgcttgaagggagggatttgatg
gcctgtgctcagacagggtcggggaagacagctgctttttgctttccaatcattagtgga
ataatgaaagatcagcatgtacagagaccccgtggttcacgaacagtctaccctcttgca
gttattctctcaccaacaagagagttggcaagtcagatacatgatgaggctaaaaagttc
tcttaccaaactggtgtgaaggtggttgttgcatatggaggaacacctattaaccagcag
ctccgggaacttgagaggggagtcgatattcttgtggcaacgcctggtcgattaaatgat
ttgctcgagagagctagagtctcaatgcagatgattagatttttagctcttgatgaggcc
gatagaatgcttgacatgggttttgaaccacaaattagaaagattgtcgaacaaatggac
atgcctccacgtggagttagacagacactgttgtttagtgctacatttccaagagaaatt
cagagactcgcagctgacttcctagcaaattatatatttttggctgtgggtagagtgggt
tcaagtaccgatttaattgtccaaagggttgagtttgtccttgactctgacaaaagaagt
catctcatggacctgcttcacgctcagagagagaatggcatccaaggcaagcaagccctg
accttagtttttgtggagacaaagagaggagctgactctttggaaaattggttgtgcatc
aatgggtttccagcaacctccattcacggtgacagaacacagcaggaaagagaagtggca
ttgaaagccttcaagagtgggagaacaccgattttggttgcaactgatgtagcagcacgt
ggccttgacattccccacgtggctcatgtggtcaacttcgatctgccaaatgacattgat
gactatgtccaccgtattggacgaacaggacgtgctggcaaatcaggactagcaactgcc
ttcttcaacgatggcaacacctcactggccagaccgctcgctgagctgatgcaagaagct
aaccaagaagtccctgagtggctcactcggtatgcgtcacggtcctcttttggtggtggt
aagaaccggcggtctggtggtcgatttggtggccgtgactttagaagggaagggtctttc
ggtagcggtagaggaggctatggcggtggaggaggagggtatggcggcggaggaggctat
ggtggtggaggaggctatggcggcggaggaggctatggtggtggatatggtggtgcttca
agtggtggatatggtggagaacctccaagtgcttgggactaa
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