KEGG   Arabidopsis thaliana (thale cress): AT2G43770
Entry
AT2G43770         CDS       T00041                                 
Name
(RefSeq) Transducin/WD40 repeat-like superfamily protein
  KO
K12857  Prp8 binding protein
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT2G43770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT2G43770
Spliceosome [BR:ath03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    AT2G43770
 Complex C
   U5 SnRNP specific factors
    AT2G43770
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_RIG_2nd NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_NWD2_C Nbas_N Beta-prop_RIG_1st Beta-prop_IP5PC_F KNTC1_N RMC1_N
Other DBs
NCBI-GeneID: 818980
NCBI-ProteinID: NP_181905
TAIR: AT2G43770
UniProt: O22826 A0A178VUX9
LinkDB
Position
2:complement(18134061..18136036)
AA seq 343 aa
MEIMSRENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMK
FNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTV
RAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDK
YQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTN
GMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWD
TTSRRTIYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggaaatcatgtcaagagagaatgagactgctttgtcaggtcctaggccgatggaatgg
tctaccgtcccacacagtgcttctcaaggacctggtcccaatggcaagaaccggacctcg
agcttggaagcacctatcatgttgctaagtggacatccgagtgctgtctataccatgaag
ttcaatcctgctggaactctgattgcatctggatcccatgacagagaaatcttcctctgg
agagttcacggggactgcaaaaacttcatggttttgaaaggtcacaagaacgccatcctt
gatcttcattggaccagtgatggctcccagattgtatcagctagtccggataaaactgta
agggcttgggatgttgagactgggaaacaaatcaagaagatggctgaacattcatcgttt
gtgaattcttgctgtcctacacgtagagggccacctcttatcatcagtggatctgatgat
ggaactgccaagctttgggacatgcgtcaaagaggagccatacaaacatttcctgataaa
taccaaatcactgcagtcagtttctcagatgcagctgataagattttcactggtggtgta
gacaatgatgttaaggtttgggacttgagaaaaggtgaagccaccatgacacttgagggc
catcaagatacaatcacaggtatgagcttaagcccagacggttcctaccttctcactaat
ggaatggacaacaagctctgtgtgtgggacatgcgtccttatgctccacaaaaccgatgt
gtaaagatctttgaggggcatcaacacaactttgagaagaacctgctgaaatgttcatgg
tcacctgatggtacaaaagttactgccggtagctcagaccgtatggttcatatctgggac
acaaccagtcggcgcactatatataagctcccaggccataccggttctgtcaatgagtgt
gttttccacccaaccgagcctatcattggatcttgcagtagtgataaaaatatctacttg
ggagagatctga

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