Arabidopsis thaliana (thale cress): AT2G43810
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Entry
AT2G43810 CDS
T00041
Symbol
LSM6B
Name
(RefSeq) Small nuclear ribonucleoprotein family protein
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT2G43810 (LSM6B)
09123 Folding, sorting and degradation
03018 RNA degradation
AT2G43810 (LSM6B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT2G43810 (LSM6B)
03041 Spliceosome [BR:
ath03041
]
AT2G43810 (LSM6B)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT2G43810 (LSM6B)
mRNA degradation factors
5'-3' decay
Lsm complex
AT2G43810 (LSM6B)
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
AT2G43810 (LSM6B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
818985
NCBI-ProteinID:
NP_001318419
TAIR:
AT2G43810
UniProt:
O22823
A0A178VRX5
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All DBs
Position
2:18149197..18151295
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AA seq
91 aa
AA seq
DB search
MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN
GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagttggagagaaagcttctggaacaactaagacacctgctgatttcttgaaa
tctatccgtggtaaaccagttgttgtcaagctcaactctggtgttgattatcgaggcatt
cttacttgtcttgatggatatatgaacatcgcaatggagcaaaccgaagagtatgtaaat
ggccagctgaagaacacatatggcgacgcttttgtccgtggcaacaatgttctttacatc
agcacaacaaaggggacattgtcagatggagcatag
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