Arabidopsis thaliana (thale cress): AT2G43860
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Entry
AT2G43860 CDS
T00041
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Module
ath_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT2G43860
Enzymes [BR:
ath01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
AT2G43860
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
818990
NCBI-ProteinID:
NP_181914
TAIR:
AT2G43860
UniProt:
O22818
A0A178W275
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Position
2:complement(18162720..18164428)
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AA seq
405 aa
AA seq
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MVYNTSCLILPLALIILDFTLISSLAHPIPSTLNVLSYGAKPDGSKDSTKAFLAAWDVAC
ASANPTTIIVPKGRFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIASSKHWIWFED
VTDVSIYGGILDAQGTSLWKCKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQKFHIV
IDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPGSTNVFIQ
TIRCGPGHGISIGSLGRAEEEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQ
HINMKMVKNPIIIDQHYCLHKPCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPC
TGIVMDDVNLVSVHRPAQASCDNANGSANDVVPFTPCLKREIIIT
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggtttataacacttcatgccttattcttcctttggctctcatcattcttgattttacc
ttaatctcatcattagcccatccgattccaagcacactcaacgtcttatcctacggagct
aaaccagacggctcaaaagactcaaccaaagccttcttagccgcatgggacgttgcttgt
gcatccgctaatcctacaactataatcgtaccaaaaggacggttcttggtcgggaacctt
gtttttcatggcaacgagtgtaagcaagcgccaatatctattcgtatagcaggctcaatc
gttgctccggaagattttagaattatcgcaagctcaaaacattggatctggttcgaggat
gttactgatgtttcaatctacggtggaatacttgacgctcaaggcactagtttgtggaaa
tgcaagaacaacggtggccataattgtcctaccggtgccaagagtttggtgtttagtggg
tcaaataacatcaaaatcagtggtttaacgtcgatcaacagccagaaattccatatagtc
atcgataatagcaataacgtgaacattgacggcgttaaggtttctgctgatgagaatagc
cctaataccgatgggattcacgtcgaatcatctcactccgtccatatcactaactcaaga
atcggaaccggtgatgattgcatctccatcggtccaggatccactaatgtattcatacaa
accattcgatgcggtccaggccacggcatcagtattggaagtcttggacgagcagaggaa
gaacaaggagtagataatgtgaccgtgagtaacgtggatttcatgggaacgaataacgga
gttaggatcaaaacatgggggaaagatagcaacagtttcgctagaaacattgttttccaa
catattaacatgaagatggtcaagaacccaatcattatagaccaacactactgtcttcat
aaaccttgccctaaacaggaatcaggagttaaagtatcaaatgtgagatatgaagatata
cacgggacttcgaatacggaagtggcggttttgttagattgtagtaaggagaaaccatgt
accggtattgtaatggacgatgtgaatcttgtctctgttcatcgaccggctcaggcgtct
tgcgataatgcaaatggatcagcgaacgacgttgtcccattcactccttgtctaaagagg
gagatcattataacttaa
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