Arabidopsis thaliana (thale cress): AT2G43890
Help
Entry
AT2G43890 CDS
T00041
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Module
ath_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT2G43890
Enzymes [BR:
ath01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
AT2G43890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
818993
NCBI-ProteinID:
NP_181917
TAIR:
AT2G43890
UniProt:
O80559
A0A178VQI1
LinkDB
All DBs
Position
2:18176831..18179178
Genome browser
AA seq
392 aa
AA seq
DB search
MDNNKLVAVLLMFFSSFLLMKSSTAASNYNVVSFGAKPDGRTDSTKAFLGAWQAACRSAA
AVTVTVPRGSFLLKPVEFRGPCRSRITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISI
IGGTLDARGASFWACRKSGKSCPVGARSMTFNWANDVVVSGLTSINSQTTHLVINSCNNV
IVRKVKLVAPDQSPNTDGLHVQGSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPG
HGISIGSLGRDANEAGVENITLINSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNV
QNPIIVDQNYCPSNQGCPKQGSGVKISQVVYRNIQGTSRTQQALTFDCSRSNPCQAIRLH
DIKLTFNGRSATSTCKNIKGVKAGVVMPQGCL
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggataataataagcttgtagctgttttgctgatgttcttttcaagtttcttgctgatg
aaatcatcaacggctgcttccaactacaatgttgtcagcttcggtgctaaaccggacggt
cgaaccgactccactaaagccttccttggcgcgtggcaagcagcttgccgttcagctgca
gcggttactgtaacggtcccgagaggaagcttcttgctcaaaccggtggagtttcgaggt
ccatgccgcagtagaataacgtttcagatctatggaacgattgtagctccttcggattac
cgcggtttgggaaattccggttattggatcttgttcgtgaaagttaaccggatctcaatc
attggaggaactttagatgctagaggtgcttctttttgggcttgtcgaaaatccggaaag
agttgccctgttggcgccagatcaatgacgtttaactgggcaaacgacgtcgtagttagt
ggcttaacgtctataaacagtcaaacaacacatttagtgataaacagctgcaacaatgta
attgtccggaaagtaaagctagtggctccagaccaaagtccgaacacagatggcctccac
gtccaaggttctgctggtgttaccgtaaccgatggcacttttcataccggagatgattgt
atctctattggtccaggaactcgtaacctctacatgtctaaactcaattgcggtccaggc
catggaatcagtattgggagtttagggagagatgcaaatgaagctggagtagagaacata
acgttgataaactctgttttttcgggctcggataatggtgttcggatcaagacatgggct
agacaaagtacaggttttgtaagaaacgttttgttccagaatctgatcatgaaaaatgtt
cagaatccgatcattgtcgatcaaaattactgccctagtaatcaaggttgtcctaaacag
ggttctggagtgaagattagtcaggttgtgtatagaaacattcaagggacgtcgcggacg
caacaggctttaacgtttgattgcagtcgcagtaatccgtgccaagcgattagattgcat
gatattaagctaacgtttaacggtcggtccgctacttcgacttgtaagaatattaaagga
gttaaggctggtgtagtgatgcctcaaggttgtctttga
DBGET
integrated database retrieval system
