Arabidopsis thaliana (thale cress): AT2G46560
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Entry
AT2G46560 CDS
T00041
Name
(RefSeq) transducin family protein / WD-40 repeat family protein
KO
K24155
rabconnectin-3a
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
AT2G46560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT2G46560
Membrane trafficking [BR:
ath04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
AT2G46560
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
AT2G46560
RAVE complex
AT2G46560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
ANAPC4_WD40
EIF3I
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
819268
NCBI-ProteinID:
NP_001323787
TAIR:
AT2G46560
UniProt:
A0A1P8AY28
LinkDB
All DBs
Position
2:complement(19115322..19125856)
Genome browser
AA seq
2505 aa
AA seq
DB search
MPETSHVAISLVTDRIDHLPLRQLRSEIVPPAPTRSQSSIDWLPDFANYSWLAYGASTLV
VISHLPSPLRGEDSTNGPFFRQILEVSGEPVTAVCWSPVTPSVGELAVGSGNYIFLFARD
LKGSFCWSQNAILVQETIVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSGDHLQ
DLVSSTWSFEGPFATATSWRKFPAECDDAGKSVLAYYSDGESYHNFELPHPQRISMIQWR
PMAAEQSAIGIGKSMRNVLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHKKSFCVAAVIE
INQVLDGCLGRDLFLFWGTRTGGIFKTIEGTNQVFSMEKYDNENVGKCEWLVGYGPGNFA
TLWAVHCLDDISPMRFPRVTLWAKQESNEIGAGSLSLASATGSSDRLPLKKVSVLRNNLY
GTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSSLLKCIDGKVLYLDGHGGKILQ
VASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPISVASWKPCGRLQNQEFRLKYT
SLCWAPSSLKDERFLLVGHVGGVDCFSVRNCGKGDDGYLTHYICTIPFTVNSPLQSGPTS
IFAKPLSNSCGKTFKSNRFLLLSVWMKEKRFDALSWSVTLHHFDTAGSTCDCHFHDFDSI
GLGKWLFEDTFAGKTNCLAIRSCSSEIPESHREDEVTSFAVVNPSGRDLENGVNSESQAY
TIATGQADGSLKLWRSSFQESSTPSGLWELVGMLTVGQNPVSAISLTDSGHKIAALCTES
HSKAARAVSIWEIVHLIDSGVFILEDKVHVDAEVVAVRWSTTGNDQLLLGVCTQIEMRVY
GIARQPCKSTSFAAYDYSSEAQIWQCFAVTRTFSAIHDLWWGPKAMTCLVHNDYISLHGQ
WLAVVDKKQKIDNYPEIFASNLPNLVNATEEGRDSEFLSDSGTNDINEADTTSTSRGCIP
LPSTSNAIDDGQVNSMSLIGTAYGSNTIDDIMSMGHMVEKLGGALPLYHPHALLVAIRSG
NWKRASAALRHLAEYITSSDTSEKGYAVKSVLCPDILLSKYYEGSLSNGPNPKDFQWGGT
SGSMLQYSQFQSGLQSKFNMESYSPNSPATDLEFSGFCEQLKKLSDEGNISRIEILQYFA
IVDLLCEISNPHSTSVYASLDEPGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGW
AFHSESQENLSGSLLPNESSWQQMRSQGFGFWYSNAAQLRSRMEKLARQQYLKNKNPKDC
ALLYIALNRVQVLAGLFKLSKDEKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLEL
AIGFFLLGGEASSAINVCVKNLQDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGD
FWLASLLKWELGEYHRSILAMAGCLENPATESSTVSSNHVSFVDPSIGLYCLMLATKNSV
KNALGERTASTLSRWASLMAATAFSRCGLPLEALECLSPSASGHGGTHQTSVPSNGQLHT
TQGVFDHSVPHSSNWVSSGVSSTVDTHFRLGLAVQFLSMILREATAPLMNSEVVSCEKFS
RFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLLSMGHNIFQENSSSGLSDDKSHT
DEDLLQYSALSKLILKATDEKSLVLSRIIAACSVTCLHSVPCFEENKVSSGPDPKWSNAL
RFYFQGILESFSNLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWVLGDVHCLFR
MVQPLVISYFNGHMPYEVDLESVKRVYHQEASVSVPDASDVGVNSKFSSVVENHGVGYPV
YSIPEDERCLVTQACFWKHVSDFVKLKLVSISINLDDGISNSGSAENFDAQTSLDSSDDI
VCVTEKIMSVLGKTLISTLAQLSSYHVKQLVLVLKQKLEKRLQVPTLLWLLECQGSQANF
LNRDIPDAGVETEKNGDPVVSVRFWKLCVDPHLLHEAFLLENFDIFEWSKSKPLEDWSDM
YREVIRKNELYVPCNQDGRSSNEVASLANHASNSSPKAAVTANENSAFQNPKEIHKRTGE
LIEALCINAINHRQAALASNRKGIIFFNLEDGDSSQNQSDYIWSDADWPHNGWANSESTP
VPTCVSLGVGLGDKKGAHLGLGGATVGVVSLSKPGKADRVPGYSGLGAIADPGSFFTQIR
RWLGVSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPTMPLFLVGSSNTHIYLWEFGNE
RATATYGVLPAANVSPPYALASISAVQFGPFGHRFASAALDGTVCTWQSEVGGRSNIHPV
ESSLCFNGHASDVGYISSSGSIVAASGYSSSGANVVVWDTLAPPSTSQASINCHEGGARS
ISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRFIATGKMKKQRNPDGGSSTDGDQNKNGM
LWYIPKAHLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKLIHHWPKLHERHTFLQPN
SRGYGGIIRAGVTDIQVCPNGFITCGGDGTVKFVSLVDSSYGDAK
NT seq
7518 nt
NT seq
+upstream
nt +downstream
nt
atgccggagacgagtcacgtcgcgatctcactggtcacagatcggatcgatcatttgcct
ctccggcaactcagatcggagatcgttcctccagctccgactcgatcccaatcttctatt
gattggcttcccgacttcgctaattactcatggcttgcttacggagcatccactctcgtc
gtcatctctcatctaccttctcctctccgcggcgaagattccacgaacggaccatttttc
cgtcagattctagaggtttccggcgaaccagttactgcagtttgctggtctcctgtaacg
ccgtctgtaggcgagctcgctgttggctctgggaactatatcttcctcttcgcgcgtgat
ttgaaaggttctttttgttggagtcagaatgccatactggtgcaggaaacaatagttgaa
gcgattgagtggacaggatccggggatgggataatagttggtggaactgatattgttctg
tggaagagaaggaaccaatcttgggaaatagcttggaagttctctggggatcaccttcag
gatctggtttcctccacctggtcattcgagggtccttttgccacagcaacttcttggagg
aagtttccagctgagtgtgacgacgcaggaaaaagtgtcttggcctattatagtgatggt
gaatcatatcataactttgaattgcctcatcctcagagaatatccatgattcagtggaga
ccgatggctgcagaacagtctgcaataggtataggtaaatcaatgaggaatgtgctaatg
acatgttgcttggatggggcagtaaggttatggtgtgaggtagatggtggaaagacaaaa
aaaggcatgaaagatgtgcctgatcataaaaaatcgttttgcgtggcagctgtgatagag
ataaatcaggtcttggatggctgtttgggtagagatttatttcttttttggggaactcgt
acagggggtatattcaaaaccatcgaaggtactaatcaagttttttctatggaaaagtac
gataatgagaatgttggaaaatgtgagtggttggtagggtatggccctggaaattttgct
actttgtgggctgtccattgtcttgatgacatctctcctatgaggtttccacgagtaaca
ttgtgggcgaaacaagaatcaaatgaaattggtgcaggatcactctctctagcgagtgct
acaggttcttctgatcgattaccccttaagaaagtttctgtattgagaaataacctttat
ggcacaccacttatctgctcgtcgatttatttatctccgcagaatactgtatattggtct
tccttgcacacaataaagtcacatgactcggaagattcatccccaaataaatccagttta
ttgaagtgcattgatggaaaagtattatatcttgatggtcatggtgggaaaatcctacag
gttgcctctgatccttttgtatgtgaggcgggatacactgcttccctggattctaatggt
ctgataataatctgctcctctagtgtttatttgaaccggactattgagcatcctatatct
gttgcctcttggaagccttgtggacggctacaaaatcaagagttcagattaaagtacaca
agtttatgttgggcaccttcttcattgaaagatgagagatttctacttgtgggacatgta
ggaggcgtcgattgctttagtgtaaggaattgtgggaaaggtgatgacggttatctaacc
cattatatatgtaccataccgtttacggttaatagccctttgcagagtggtccgaccagc
atatttgcaaaacctctgtctaattcttgtggaaagacatttaaaagtaacagatttttg
ctcctgagtgtatggatgaaagagaaacggtttgatgctctgtcatggagtgtaacctta
catcattttgatacagcaggaagtacctgcgattgtcattttcatgattttgatagtatt
ggattgggaaagtggttgttcgaagatacttttgctggcaagacgaattgccttgctatt
agatcatgctcttcagaaatacctgaatctcaccgtgaggatgaagttacgagttttgct
gtggtcaatccaagtgggagggatctagagaatggtgtgaacagtgaaagtcaagcttat
actattgcaactggtcaagctgatggctctttaaaactttggagaagtagttttcaggaa
agttcaacaccttccggtctgtgggagctagttggcatgcttacggttggccaaaatcct
gtcagtgctatatctctgactgattcgggacacaagatagcagccctctgtacagagagt
cattcaaaagctgcccgcgcagttagtatatgggagattgtacaccttatagattcaggg
gttttcatactagaggataaggtacatgttgatgcagaagttgttgctgtaagatggtca
actacgggtaatgatcagctattacttggagtttgcacacagattgagatgcgggtgtat
ggtattgctcggcagccttgcaaaagtaccagtttcgcggcctatgattattcttcagag
gcacagatttggcaatgcttcgctgttactcgtacattttcggctatacatgatttatgg
tggggacccaaagccatgacttgtcttgttcacaatgattatattagtctacatggtcaa
tggctggctgttgttgataagaagcaaaagattgataactatccagaaatatttgcatcc
aatcttcccaacttagtaaatgctacagaagaaggcagagactctgaattcttatctgat
tctggtactaatgatatcaacgaagctgataccacatctactagcagaggttgtattcct
ctaccttcaactagtaatgcaattgatgacgggcaagtcaatagtatgtcactgattggg
accgcatatggctcaaatactattgatgacattatgagcatgggacatatggtggagaag
ttaggaggtgctttaccactttatcatcctcatgccctccttgtagctatacgttcaggc
aattggaaacgagcaagtgcagctcttagacatcttgctgaatatattacttcaagtgat
acctccgagaagggatatgctgtaaagtcagttctttgtccagatatccttttgtcaaaa
tattatgaaggatctctctccaatggcccaaatcctaaggatttccaatggggtgggacg
tctggttcaatgctacagtattcgcagtttcagtcagggttgcagtcaaaatttaatatg
gaatcgtatagtcccaattcacctgcaacagacttggaatttagtggcttctgcgagcag
ctcaagaagttatcagatgaaggaaatatttccaggatagaaatattgcaatattttgca
attgttgaccttctttgtgaaattagtaacccacattctacgtctgtctatgcaagtctt
gatgaacctgggagaagattttgggtcacacttaggtttaaacagctattcttagctcga
agttctggtaaaacagcatctctggaagagcttgatattgactctagtatgataggatgg
gcttttcactcagagtctcaagaaaatttgtctggttctcttttgcccaatgaatcatca
tggcaacaaatgcgatcacagggttttggattttggtattcaaatgcagcacaattgcga
tcacggatggagaaactggcccgacagcaatacctgaagaacaagaatcctaaagattgt
gcgcttctctatatagctttaaatagagttcaagttttggctggtcttttcaaattaagc
aaggatgagaaagataaacccttggtggtttttctttcacgcaattttcaggaagagaaa
aataaggcagcagccttgaaaaatgcatatgtactaatgggtaaacaccaactggaactg
gctataggtttctttctccttggaggtgaagcttcatctgcaataaatgtttgtgtgaaa
aatcttcaggatgagcagcttgcgctcgtaatttgccggcttattgatgggcagggtggg
gccctggaaagtaatcttataaagaaatatatactcccatctgctgttcagagaggagac
ttttggctagcaagccttcttaagtgggaattaggagagtaccaccggtcaattcttgct
atggctgggtgtctagagaaccctgctactgagagctctactgtttcttcaaatcacgtc
tcttttgtggatcctagtattggcctatactgcctcatgttggcaaccaaaaatagtgtg
aagaacgcattgggggaaagaactgcctcaactcttagtagatgggcatccttaatggct
gctaccgccttcagcagatgtgggctcccgctcgaggcgttagaatgtctttcaccatct
gccagcggtcatggtgggacccatcagactagcgttccaagtaacggtcagttgcatact
acacaaggtgtttttgatcactctgttcctcattcgtcgaattgggtatcaagcggtgtt
tcatctactgtggacactcattttagattgggtttagccgtccagttcctctcgatgatc
ttacgggaagcaactgcacccttaatgaattctgaagttgtttcatgtgagaaattctca
cgatttcaacataagctacaaacagctttggagcaatttcaccagagattttcgctgtct
gcatcttacctacgtaatatgatgattctgtcagcatacaaccgagggttactatccatg
ggacacaatatatttcaggaaaatagttcctcaggactctcagacgacaagtctcacaca
gatgaagatctcctccagtattcagcgttgtctaaattgattctaaaagcgactgatgag
aaatcattggtgttatcacgtatcattgctgcgtgcagtgtcacttgcttacactcagtg
ccatgctttgaggaaaacaaggtgtcatctggacctgatccaaagtggtccaatgctttg
cggttttactttcaaggaattctggaatcgttctctaatttaagaacttctataaggctg
tgcttgggctcctctgtggaagacctgaaaacaaaacttgcagttgttcttgatttagtc
gaatattgtttgagactcgcaatggcttgggttctgggagacgtgcattgtctctttcga
atggttcagccccttgtgatatcatattttaatgggcatatgccttatgaggttgacctg
gaaagtgtgaagagagtataccaccaggaagcttctgttagtgtaccagatgcatcagat
gtaggagttaattctaagttcagcagtgttgttgagaatcacggagttggctatccagta
tactcaattccagaagatgaaagatgtctggtaacacaagcttgtttctggaagcatgtt
tcagactttgtgaaacttaagctggtatctatttcgatcaatctagatgatggtatttcg
aatagtggttccgctgaaaattttgatgcccagacatcattggactccagtgatgacatt
gtatgcgtaacggagaagataatgtctgttctgggaaaaacactgattagcaccctagct
caactctcttcgtaccatgtaaaacaactagtattagtcttgaaacagaaactagagaag
agacttcaggttcctaccttgttatggctgctcgaatgtcagggatctcaagcaaatttt
cttaatcgggatatcccagatgcaggtgtagagacggaaaaaaacggtgaccctgtggtt
tctgtgaggttctggaagctttgtgttgatcctcatttactacacgaagctttcttgtta
gaaaattttgacatatttgaatggtcaaaatctaaaccattggaagattggagcgatatg
tacagagaagtaatcaggaagaatgagctctatgtgccatgcaatcaagatggtcgaagt
agtaatgaggtggcttcacttgcaaaccacgcttcaaattcttcaccaaaagctgcggta
actgccaatgaaaactctgcgttccagaaccccaaagaaatccataagaggaccggggag
cttatagaggccctttgtatcaacgccattaaccatcggcaagctgcattagctagcaac
cgcaagggtataattttctttaacctagaagatggtgattcttcccaaaatcagtcagac
tatatctggtcagatgctgactggccacataatggttgggctaactctgagtcaactccc
gttccaacatgtgtttcactcggtgttggtcttggggataagaaaggagcacaccttggg
ttaggtggggccactgttggagttgtttctctttccaagcctgggaaagctgacagagtt
cctggctactctgggttaggagcgatagcggatccaggatcattttttacccagatccgc
cggtggttaggagtctctggtctaggttgggaaactcaagaagaatttgaagagtttgtt
gatcctcccccaacagttgaaagtgttattacgagagcattctctaatcacccgacaatg
cccctcttcttggttggctcaagcaacactcacatatacttgtgggagtttggaaacgaa
agagctactgcaacttatggtgttcttcctgctgcaaatgtttcccctccttatgctttg
gcgtcgatatcagcagtgcaattcggtccattcggacacagatttgctagcgctgcactg
gatggaactgtatgcacttggcaatcagaagttggaggaaggagcaatattcatcctgtt
gaatcatctctttgcttcaatggccatgcatcagatgtaggatatattagttcgagtgga
tccattgttgcagcttcaggatatagctcaagtggtgcaaatgtcgttgtgtgggatact
ctagctcccccttcaacctcccaggcatctatcaattgccatgaaggtggtgcacgctct
atctcggtatttgataatgacattggtagtggttcaatttctcctatgattgtgactggt
ggcaaaaatggtgatgtcggtttgcacgatttccggtttattgcaaccggaaagatgaag
aagcaaaggaaccctgacggtggatcttcgactgatggagatcaaaacaagaatgggatg
ctttggtatataccaaaggctcacttagggagtgtgacaaaaatagcgacaatcccacgc
acaagtcttttcttgacgggaagcaaagacggagaagtaaaactttgggatgcgaaagct
gcaaagttgattcatcattggcctaaactacacgaaagacacacttttctgcagccaaac
tcgagaggctacggtggaatcatccgggctggggtgactgacatacaagtttgtccgaat
ggatttataacgtgtggtggtgatggcacggtgaagttcgtcagcctcgtagattcttcc
tatggcgatgctaaataa
DBGET
integrated database retrieval system
