KEGG   Arabidopsis thaliana (thale cress): AT3G01340
Entry
AT3G01340         CDS       T00041                                 
Name
(RefSeq) Transducin/WD40 repeat-like superfamily protein
  KO
K14004  protein transport protein SEC13
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03013  Nucleocytoplasmic transport
ath04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    AT3G01340
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    AT3G01340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT3G01340
   04131 Membrane trafficking [BR:ath04131]
    AT3G01340
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     AT3G01340
Membrane trafficking [BR:ath04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    AT3G01340
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    AT3G01340
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    AT3G01340
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_Vps41 ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st Beta-prop_IFT122_1st EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WD40_2 WD40_RFWD3 Beta-prop_SCAP Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 821216
NCBI-ProteinID: NP_186783
TAIR: AT3G01340
UniProt: Q9SRI1 A0A178VCP4
LinkDB
Position
3:complement(127303..128994)
AA seq 302 aa
MPPQKIETGHSDTIHDVVMDYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVW
QVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSL
ACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAPATEPGALVSSGMIDPVYKLA
SGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII
WTIGKEGEQWEGTVLKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQVTVV
EP
NT seq 909 nt   +upstreamnt  +downstreamnt
atgcctcctcagaagattgaaactggtcatagcgacactattcatgatgtggtcatggat
tactatggaaagcgagtagcaactgcctcgtctgactgcacgatcaagataaccggagta
agcaacagcggtggatctcagcatctagctaccttaaccggtcatcgaggtcctgtctgg
caagtcgcttgggcgcacccaaagtttggttcacttctcgcttcatgttcctatgatggg
caaattatattatggaaagaaggtaaccaaaaccaatggacacaagctcatgtcttcaca
gaccacaaagtatctgtcaactctatcgcttgggctcctcatgaacttggactctcctta
gcttgcggagcatctgatggaaacatatcagttttctcggctcgagctgatggcggttgg
gacacgacaaagatagaccaagcacaccctgttggtgtcacttcagtgtcgtgggcaccg
gccacagaaccaggcgcactcgttagctctggtatgatcgatccggtctacaaactagca
tccggcgggtgtgatagcacggtgaaagtgtggaagttctcgaacgggtcatggaaaatg
gattgtttcccggctctcaacaagcacacggattgggtccgtgatgtggcttgggcaccg
aacttgggtctcccaaagtcaaccatagccagtggttcagaagatgggaaagtgatcata
tggaccatagggaaagaaggtgagcaatgggaaggtactgttttgaaagatttcaaaaca
ccagtgtggcgggtctcgtggtcgttgaccggtaatttgttggctgtttccgatgggaac
aataacgttacagtgtggaaagagtctgttgatggagagtgggaacaagtgactgttgtt
gagccatag

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